General information for g2882.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2882 is located on chr_3: 20871838..20873228 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2882 | g2882.t6 | TTS | g2882.t6 | 20871784 | 20871784 |
| chr_3 | g2882 | g2882.t6 | isoform | g2882.t6 | 20871838 | 20872830 |
| chr_3 | g2882 | g2882.t6 | exon | g2882.t6.exon1 | 20871838 | 20872049 |
| chr_3 | g2882 | g2882.t6 | cds | g2882.t6.CDS1 | 20871838 | 20872049 |
| chr_3 | g2882 | g2882.t6 | exon | g2882.t6.exon2 | 20872248 | 20872830 |
| chr_3 | g2882 | g2882.t6 | cds | g2882.t6.CDS2 | 20872248 | 20872479 |
| chr_3 | g2882 | g2882.t6 | TSS | g2882.t6 | 20872895 | 20872895 |
Sequences
>g2882.t6 Gene=g2882 Length=795
ATGTTTAATGCAAAAGAACAGCGAAAAAGACAAATAGATACATTAAAAGTCTTTAATCAC
AAGTAATTTAAAATAAAGTTATAAATCACATTTAAACCAAATGTCCATAAAATAATTTTT
AGTGTTTCAGAAATAATCGAAGACAAAGAATATCAAATTAAATTTAAATCTGGAAAATCT
AGAAAAATAACTTTAGTTATAGAATTGGATCAAGATTTTCCATATACACCCCCAAAATTG
TCAACTATACCTTCGATAATAAATCATCCATGGATTGAGAATAAAGTTATAAAATCACCT
GGAGTTTTGAATGTATGTATGCATTTAATTTTTCTTAACTCATGAATCAAAATGATTTGG
TTTTACTGTCAGTTTACAATTAATTCTGATTTGGGAAGAGTCTGTCAAGCTGTGATTCGA
GAATTTGAAAAAAATCCCCCAGAAGTGGCAGATGATAATCAACCGAAACCTCAGCAAATT
TATTCATCAATAAAAGAGATTGAAGAATTAGATGTAGATCAACTATATGCACTTCTTAAT
GATGATCAATATTTAGAGGATTTTATTGAAGAATTACAACCTAAAAACATCAGACAGTTA
CTTGAAATAGCTGTTTCAAATGCAGAGTCACAATGTGAGGAGTATGTGAATGCTTTTTTA
ACAAATCAATCAACTAATGGAAATCAATCTATGAATGAATTTTTGGAGAATTTTATGAAG
ATTAAAAAATTAATTGCTATACGAAAATTCAAAGAAGAAAGATTGAATTTTCAATTAAAT
CAACTTAAACTCTAA
>g2882.t6 Gene=g2882 Length=147
MIWFYCQFTINSDLGRVCQAVIREFEKNPPEVADDNQPKPQQIYSSIKEIEELDVDQLYA
LLNDDQYLEDFIEELQPKNIRQLLEIAVSNAESQCEEYVNAFLTNQSTNGNQSMNEFLEN
FMKIKKLIAIRKFKEERLNFQLNQLKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2882.t6 | Coils | Coil | Coil | 81 | 101 | - |
| 1 | g2882.t6 | Pfam | PF07200 | Modifier of rudimentary (Mod(r)) protein | 62 | 135 | 1.4E-8 |
| 3 | g2882.t6 | ProSiteProfiles | PS51314 | VPS37 C-terminal domain profile. | 58 | 147 | 13.416 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
