General information for g2885.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2885 is located on chr_3: 20879623..20893550 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2885 | g2885.t1 | isoform | g2885.t1 | 20879623 | 20893550 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon1 | 20879623 | 20879816 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon2 | 20882419 | 20882567 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon3 | 20882642 | 20882755 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon4 | 20882854 | 20882953 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon5 | 20883068 | 20883202 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon6 | 20884481 | 20884561 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon7 | 20890807 | 20890957 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon8 | 20892679 | 20892875 |
| chr_3 | g2885 | g2885.t1 | cds | g2885.t1.CDS1 | 20892826 | 20892875 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon9 | 20892995 | 20893134 |
| chr_3 | g2885 | g2885.t1 | cds | g2885.t1.CDS2 | 20892995 | 20893134 |
| chr_3 | g2885 | g2885.t1 | exon | g2885.t1.exon10 | 20893204 | 20893550 |
| chr_3 | g2885 | g2885.t1 | cds | g2885.t1.CDS3 | 20893204 | 20893550 |
| chr_3 | g2885 | g2885.t1 | TSS | g2885.t1 | NA | NA |
| chr_3 | g2885 | g2885.t1 | TTS | g2885.t1 | NA | NA |
Sequences
>g2885.t1 Gene=g2885 Length=1608
ATGATCGATTCTGTTCCCACGACTGTGCTTCAAAACTGCACCATTGCTATTTTATATCGT
TTTCCCAATTTAACAGAATATAATGAAACGGATATTAGAATTTTTGAGAGAAATGATGTT
GAAGATGCTTTAAGTGACATAATTCAAAAATACCATACTATCTATACGGATACACGATTA
CAAAATTCATTTACAGAATCTGTAAAAGACTGTCTCTTTAGTGCACTCAATCAAAAACCT
TTTGAATTACCATGGTTGCAAAAATTTTTTTGGTTTGTTACTTTTTTTGCAATGCTCTTT
GTAGCCATTTCTGGAAATGTAATAGTGCTGTGGATAGTCATCGCCCATCGACGTATGCGC
ACAGTAACAAATTATTTTCTCGTAAACCTTAGTCTCTCTGACTTACTCATGGCCACAATG
AACTGTGTGTTCAATTTTATTTTCATGATCGACTCAGATTGGCCTTTTGGTTATATATAC
TGCATAATAAATAATTTCATTGCGAATTTATCTGTTGCTGCCTCCGTTTTTACTCTCGTT
GCAATATCTTTTGACAGATATATTGCTATTGTGAAACCGCTACATCATCGTTCTTCTCGT
ATAAGAGCGAAAATATTTTTGTCTCTTATTTGGTCCACAAGTTGCGTTTTAGCAGCTCCT
TGCTTATTTTATTCTAAAATTTCCACCAAAAGCTATTCCAAAGGGAAAACTCGAACTGTT
TGTTATCTAGAATGGCCTGATGGGCAATTTCCAGTATCTCGAGCGGATTACATATACAAT
ATAGTATTTTTGATACTAACATATGCCATACCAATAGCAATCATGATATTTTGTTATTCA
TTAATGGGAAGAGAACTTTGGGGTAGTCGATCCATAGGTGAACATACAGAAAGACAACTA
GAATCGATGAGATCGAAACGAAAGGTTGTTCGAATGTTTGTCGTGATTGTGACAATATTC
GCAGTATGCTGGTTACCGTACCATCTTTTCTTTATCTATTCGTATTATAATACTTCTATG
GTTTCAACGAGTTATGCACAGCATCTATACCTAGGCTTCTATTTTTTAGCAATGGCAAAC
GCGTCAGTAAATCCACTCATCTACTATTACATGAATGAAAGATTCCGAATATATTTTCAA
CAAGCCATTTGCTGCCTATGTCGTTTTAAGCCGTGGAAATCTAATAGAAAAGCTGGTTCG
CCACAGGGAGGAATTTTACTAGGAAAACATTCGCACTCGGAAATGATGCAAGCTAAATCA
CCACGCCAAAAGACGCTTTCAGTAAAGTGGCATCAAAGTATGAGTGAGACTAAATTGCAT
CATGTGTCGTCAAGAAAAAATATGGACATAGCATCTGTTCGCAATCGTTCCCAAACGCAG
AAGCTTAGTGACTCGCATGAATGTGTATCACGACAAGAATCATTGGTAACCGCAACAACA
CCACTGATGGTAACCAACTCTAATATCAATGCAGTTAATTCATCAGATGATATTAAATGT
GACTGCATTGCACCACAGGATTGCATCACTAATATCAAGTTTCAAATGAATGGTCATGAT
GACACGACCACGCATGATGTGTTTGCAGTAAAAAGCGAGGGCTGTTGA
>g2885.t1 Gene=g2885 Length=178
MANASVNPLIYYYMNERFRIYFQQAICCLCRFKPWKSNRKAGSPQGGILLGKHSHSEMMQ
AKSPRQKTLSVKWHQSMSETKLHHVSSRKNMDIASVRNRSQTQKLSDSHECVSRQESLVT
ATTPLMVTNSNINAVNSSDDIKCDCIAPQDCITNIKFQMNGHDDTTTHDVFAVKSEGC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2885.t1 | Gene3D | G3DSA:1.20.1070.10 | - | 1 | 71 | 5e-07 |
| 1 | g2885.t1 | SUPERFAMILY | SSF81321 | Family A G protein-coupled receptor-like | 1 | 43 | 7e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
