General information for g2895.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2895 is located on chr_3: 20969046..20969837 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2895 | g2895.t2 | TTS | g2895.t2 | 20967386 | 20967386 |
| chr_3 | g2895 | g2895.t2 | isoform | g2895.t2 | 20967445 | 20969837 |
| chr_3 | g2895 | g2895.t2 | exon | g2895.t2.exon1 | 20967445 | 20968351 |
| chr_3 | g2895 | g2895.t2 | cds | g2895.t2.CDS1 | 20968335 | 20968351 |
| chr_3 | g2895 | g2895.t2 | exon | g2895.t2.exon2 | 20968417 | 20968496 |
| chr_3 | g2895 | g2895.t2 | cds | g2895.t2.CDS2 | 20968417 | 20968496 |
| chr_3 | g2895 | g2895.t2 | exon | g2895.t2.exon3 | 20968553 | 20968989 |
| chr_3 | g2895 | g2895.t2 | cds | g2895.t2.CDS3 | 20968553 | 20968989 |
| chr_3 | g2895 | g2895.t2 | exon | g2895.t2.exon4 | 20969046 | 20969333 |
| chr_3 | g2895 | g2895.t2 | cds | g2895.t2.CDS4 | 20969046 | 20969333 |
| chr_3 | g2895 | g2895.t2 | exon | g2895.t2.exon5 | 20969397 | 20969477 |
| chr_3 | g2895 | g2895.t2 | cds | g2895.t2.CDS5 | 20969397 | 20969477 |
| chr_3 | g2895 | g2895.t2 | exon | g2895.t2.exon6 | 20969530 | 20969837 |
| chr_3 | g2895 | g2895.t2 | cds | g2895.t2.CDS6 | 20969530 | 20969535 |
| chr_3 | g2895 | g2895.t2 | TSS | g2895.t2 | 20969893 | 20969893 |
Sequences
>g2895.t2 Gene=g2895 Length=2101
ATGACTACAGATTTAATAATCGAAGAAAGTGACATGAACGAACAGTTCAACAATTTAGAC
CAGCAGTGTACTGATATAGATTGTTACAGGAAATTAGTTAAAAATTTGTTAGATTTGCGA
AGATACAAATCTGCTTTATACTGGTCAGAAAAAGTAGCTGTACTCTCACAAAATTATCCT
AAAGATGTCTATCAAATGGCACAATGCATGTACATGTTAAAAGAATATAACAGAGCAGGT
CATGTTATCAAAAGAAGTGAATTAGAAAAGAAAAATCTGCTATGCTTAACTTTATTAATT
GAATGCCTATTGAAGATCTTAATACATCACTTCATGAGGAAACAGATATTGATCCTGTGA
TTAATCAAATTAATGATAATACAAAAAATGACCTTCTGGCTTCACTTTATTTATTGAAAG
CAAAAATTCTTGAGGCCGTTGATAAAAGATCGTTGGCTATTGATTGTTATATTCATGCAT
TACAAAAATCCGTTTATATGACCGAAGCGCTTGATGCACTTGTACATCATGAAATATTAA
TGTCATGGGAGGAGAAAGATTTAATTCAAAATATAATGCCTACTAAGCAATGCAATGATG
CTGATTTGCATATACTCAAATATTTATATGAACAAAAGCTGAAAAAGTACTATTCATCAA
CATCAACGTCACCGCAAATGGGTCATCCAGAAAAGACACCGAACAATGCTCAGCTTTTAA
ACGCTATAAATGAAAAAATAAAAGCAAGTGAAACTGTAGAAAATCGTAAATCAATATCGA
CATCAACTGCTGTTAAAGGAAGCATAAAGTTATTTTCAACACCCTCCACTCAAACAATTA
TGTCGCCAGCTAATAAAATTCTTTATGATCTCAAAAATACATCGGCCTCATCTTTTTCAA
TTCAGTCGAGTTTATCAAGATCTATGCTTAATTGTAGTCGCACGGTCAACACTAATAATA
AAATTCCATCTAGAACAGCAAAAAATTCTGGCGATATAATAACAGCAAAGAATGCATTAA
GAATTCTAGAAAATAGCGTAGATATTTTGATTGCGAATGCAGAGGAATTATTTTACAATT
GTGAATACAAGAAATGCTTGAAAATTATAGAAGAAATTTTAGATCGAGATCCATATCATA
AAAGAACTTTATTTGTACAAATTGGTTGTCTCATGGAATTAAAAGACTCGAATGCATGGC
ACATAAGTTAGTTGATTTTAATCCAGATGAGCCAATTAGTTGGTATGCGGTAGGCTCATA
TTATATTCTTATAAATAAACCTGAACAAGGAAGACGTTATTTAACAAAAGCAGTTTTGTT
AGATCGATTATTTGGTCCTGCATTTTTGACATATGGACATTCGTTTGCAAAAGAAAAAGA
ACACGATCAAGCAATGGCAGCATATTTTAAAGCTATTCAATTAATGCGTGGATGCCATTT
ACCCTTTCTCTATATCGGTGTAGAATGTGGACTTACGAAAAATTATGAAATGGCCGAAAA
GTTCTTTTATCAGGCAATGTCACTTGCTCCATTAGATGTATTTGTACTTCATGAGCTTGG
AGTTATTAAATATGAGTCAGAATTATATGAAGATGCAGAAGAAATTTTTAGAACTACATT
GAGCATGGTAACTGAAATGTGCAAACAAAAGAATGAATCATTGAGTGATAGATGGGAGCC
ACTTTTAAACAATCTTGGACATTGCTGTAGAAAGAATAAAAAATTAACTGAATCTTTGGA
TTTTCATATGCGAGCCTTATCATTAAAACCATTGAACTCGCAGACTTACACTTCCATTGG
ATTTGTACTCGCATTGATGGGTAGATTAAGTGAAGCTGTGGAAAACTTTCATAAAAGTTT
AGCATTGAAAAGGGATGACGTAATAACGAGTACAATTTTAAAGACAGTGCTCGAAGATCT
TGTTGAAGATATGGTAGAAATTGAAGGTGGTGATGAAAAAGAAAATCAGCAACAACAGAA
ACATGATATCACGGCAAATTTGACTTCATCTGGGGAAACGATAGATTATATCGATGTTTA
TCGTCAACTGAAGTTTGATGAACGTGAAGATTCAGCAGATATGAACTTAGAATGTGATTG
A
>g2895.t2 Gene=g2895 Length=302
MPIEDLNTSLHEETDIDPVINQINDNTKNDLLASLYLLKAKILEAVDKRSLAIDCYIHAL
QKSVYMTEALDALVHHEILMSWEEKDLIQNIMPTKQCNDADLHILKYLYEQKLKKYYSST
STSPQMGHPEKTPNNAQLLNAINEKIKASETVENRKSISTSTAVKGSIKLFSTPSTQTIM
SPANKILYDLKNTSASSFSIQSSLSRSMLNCSRTVNTNNKIPSRTAKNSGDIITAKNALR
ILENSVDILIANAEELFYNCEYKKCLKIIEEILDRDPYHKRTLFVQIGCLMELKDSNAWH
IS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2895.t2 | Gene3D | G3DSA:1.25.40.10 | - | 11 | 200 | 0 |
| 5 | g2895.t2 | Gene3D | G3DSA:1.25.40.10 | - | 201 | 300 | 0 |
| 1 | g2895.t2 | PANTHER | PTHR12558:SF9 | CELL DIVISION CYCLE PROTEIN 16 HOMOLOG | 28 | 298 | 0 |
| 2 | g2895.t2 | PANTHER | PTHR12558 | CELL DIVISION CYCLE 16,23,27 | 28 | 298 | 0 |
| 3 | g2895.t2 | SUPERFAMILY | SSF48452 | TPR-like | 17 | 297 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
