General information for g2895.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cell division cycle protein 16-like protein.
Parent gene
- The parent gene g2895 is located on chr_3: 20969046..20969837 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2895 | g2895.t3 | TTS | g2895.t3 | 20968178 | 20968178 |
| chr_3 | g2895 | g2895.t3 | isoform | g2895.t3 | 20969046 | 20969837 |
| chr_3 | g2895 | g2895.t3 | exon | g2895.t3.exon1 | 20969046 | 20969327 |
| chr_3 | g2895 | g2895.t3 | cds | g2895.t3.CDS1 | 20969046 | 20969327 |
| chr_3 | g2895 | g2895.t3 | exon | g2895.t3.exon2 | 20969397 | 20969837 |
| chr_3 | g2895 | g2895.t3 | cds | g2895.t3.CDS2 | 20969397 | 20969837 |
| chr_3 | g2895 | g2895.t3 | TSS | g2895.t3 | 20969893 | 20969893 |
Sequences
>g2895.t3 Gene=g2895 Length=723
ATGACTACAGATTTAATAATCGAAGAAAGTGACATGAACGAACAGTTCAACAATTTAGAC
CAGCAGTGTACTGATATAGATTGTTACAGGAAATTAGTTAAAAATTTGTTAGATTTGCGA
AGATACAAATCTGCTTTATACTGGTCAGAAAAAGTAGCTGTACTCTCACAAAATTATCCT
AAAGATGTCTATCAAATGGCACAATGCATGTACATGTTAAAAGAATATAACAGAGCAGGT
CATGTTATCAAAAGAAGTGAATTAGAAAAGAAAAATCTGCTATGCTTAACTTTATTAATT
GAATGCCTGTATGCATCAAAAGAATATCAAGAGGCATTGAATTTATTAGATTCTCTTGAT
ATTGAAGATCTTAATACATCACTTCATGAGGAAACAGATATTGATCCTGTGATTAATCAA
ATTAATGATAATACAAAAAATCTGGCTTCACTTTATTTATTGAAAGCAAAAATTCTTGAG
GCCGTTGATAAAAGATCGTTGGCTATTGATTGTTATATTCATGCATTACAAAAATCCGTT
TATATGACCGAAGCGCTTGATGCACTTGTACATCATGAAATATTAATGTCATGGGAGGAG
AAAGATTTAATTCAAAATATAATGCCTACTAAGCAATGCAATGATGCTGATTTGCATATA
CTCAAATATTTATATGAACAAAAGCTGAAAAAGTACTATTCATCAACATCAACGTCACCG
CAA
>g2895.t3 Gene=g2895 Length=241
MTTDLIIEESDMNEQFNNLDQQCTDIDCYRKLVKNLLDLRRYKSALYWSEKVAVLSQNYP
KDVYQMAQCMYMLKEYNRAGHVIKRSELEKKNLLCLTLLIECLYASKEYQEALNLLDSLD
IEDLNTSLHEETDIDPVINQINDNTKNLASLYLLKAKILEAVDKRSLAIDCYIHALQKSV
YMTEALDALVHHEILMSWEEKDLIQNIMPTKQCNDADLHILKYLYEQKLKKYYSSTSTSP
Q
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2895.t3 | Gene3D | G3DSA:1.25.40.10 | - | 24 | 241 | 0 |
| 2 | g2895.t3 | PANTHER | PTHR12558:SF9 | CELL DIVISION CYCLE PROTEIN 16 HOMOLOG | 28 | 237 | 0 |
| 3 | g2895.t3 | PANTHER | PTHR12558 | CELL DIVISION CYCLE 16,23,27 | 28 | 237 | 0 |
| 1 | g2895.t3 | Pfam | PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 | 40 | 118 | 0 |
| 4 | g2895.t3 | SUPERFAMILY | SSF48452 | TPR-like | 21 | 116 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed