General information for g2904.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytochrome P450 306a1.
Parent gene
- The parent gene g2904 is located on chr_3: 21051984..21054077 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2904 | g2904.t3 | TTS | g2904.t3 | 21051863 | 21051863 |
| chr_3 | g2904 | g2904.t3 | isoform | g2904.t3 | 21051984 | 21054077 |
| chr_3 | g2904 | g2904.t3 | exon | g2904.t3.exon1 | 21051984 | 21052164 |
| chr_3 | g2904 | g2904.t3 | cds | g2904.t3.CDS1 | 21051984 | 21052164 |
| chr_3 | g2904 | g2904.t3 | exon | g2904.t3.exon2 | 21052307 | 21052446 |
| chr_3 | g2904 | g2904.t3 | cds | g2904.t3.CDS2 | 21052307 | 21052446 |
| chr_3 | g2904 | g2904.t3 | exon | g2904.t3.exon3 | 21052525 | 21053035 |
| chr_3 | g2904 | g2904.t3 | cds | g2904.t3.CDS3 | 21052525 | 21053035 |
| chr_3 | g2904 | g2904.t3 | exon | g2904.t3.exon4 | 21053183 | 21053528 |
| chr_3 | g2904 | g2904.t3 | cds | g2904.t3.CDS4 | 21053183 | 21053460 |
| chr_3 | g2904 | g2904.t3 | exon | g2904.t3.exon5 | 21053649 | 21054077 |
| chr_3 | g2904 | g2904.t3 | TSS | g2904.t3 | 21054159 | 21054159 |
Sequences
>g2904.t3 Gene=g2904 Length=1607
ATGAAATGTGAGTGAAATTCTAATACAACTAAAAAAATGAATCGTATTTCGTGTGGAATT
CTTTTCAACTTATTTGTTTGCTTCAATCCCATAGGTCGTTTTTCTTCATCACTCTCTTAT
CTTTTGTGCTCTTCTTCCTGCTTATTTTTTACCTTTTTAAAGTGCGAAAAGTGCGTGCGA
GTGTTCCACCGGGTCCATGGAGAAATCATATTCCTTTTATTGGCTATTTACCCTTCTTAA
ATCCAACGCAACCACACAAAAGTTTATTTGAGCTCTCAAAAAAGTATGGCAATATATTTA
GTCTGCAGCTGGGTTCAATTTTCACTGTTATTCTCGCTGATTCAACTCTCATTCGTGAGG
CATTTCGACGAGATGAATTTAGTGGGCGAGCTCCTCTCTATGTCACACATGGTATATTTC
ACGGATATGGCATAATATGCACAGAAGGTGAATTTTGGAAAGATCAGCGTGCATTAGTTC
ACAAATTTCTACGCGACATGGGAATGATAAAATTCGGTATAAAACGTGAAGCAATGCAAC
AGCGTATAATGGAGGGAATCAATTTATGCATTTTGGAAATAGAGAAACTCAGTTCGCAAA
CAATAAATCCTTTTAATATTTTAATTAACACTGTGGGAAATATTGTGAATGATTTTGTAT
TTGGCATTAAATACGATTGGAATGCTGACACTTGGAAGTATTTAAAATATTTACAAGAGG
AAGGTATTAAACTTGTAGGACTCAATGCGGGAGCAAATTTCCTACCAATTTTGAGATATT
TGCCCAACAACAGACGAAACATGAATTTCGTTTTAACTGGCAAAGAAGAGCAACATAAAG
TTTATGATACCATAGTAGATAATTGTATGAGAGCATTGGACACTTCTATGGAGTATCGCG
ACTGCATTCTGAAAAGATTTTTATTAGAGAAACGTGACCGAGAAAGGCGTCATGATGAAT
TAGCTGGAAACTGTTCTCGCGTACAACTGAATCATCTTCTTGCTGACATTTTTGGAGCTT
CATTGGATACAACATTAGGAACGCTTCGTTGGTATCTTCTTCTTATTGCCATAAACAATG
AGCATCAAGATCAAATTTACGATGAAATGCAGAAGAATGGAATTAAAGAAACCTACTTTT
TGGATGACATTGAGAGCATGCCATATTTAAGGGCAACAATTGCAGAGGCTATGAGATTAA
AATCGGTTGTACCTTGTGGCATTCCGCATGGTAATTCAAATCAACAAACCACTTTGGGCG
GTTATACAATACCAAAAAATACGATGATTTTACCGCTACAATATGCCGTTCACATGAACG
AAAATTTATGGCCACAACCGCAAATCTACAATCCCAATCGATTCATTGATGAAGATGGCA
AATTTTTCACATCTTCACATTTTATACCGTTTCAAGCAGGAAAGAGGATGTGTCTTGGCG
AGGAACTGGCAAAAATGTTTTTAAATCTTTTTGCTGCCAATATTTTATTGAATTTCAACA
TTAAATTGGGTAGCGATCCTGACAAGCTGGATTTATCCGGAATTTGTGGCTTAACCTTAA
GTCCTCCAGAACATTTTTTGATATTTGAAAAACGTCAGAGAAACTAA
>g2904.t3 Gene=g2904 Length=369
MGMIKFGIKREAMQQRIMEGINLCILEIEKLSSQTINPFNILINTVGNIVNDFVFGIKYD
WNADTWKYLKYLQEEGIKLVGLNAGANFLPILRYLPNNRRNMNFVLTGKEEQHKVYDTIV
DNCMRALDTSMEYRDCILKRFLLEKRDRERRHDELAGNCSRVQLNHLLADIFGASLDTTL
GTLRWYLLLIAINNEHQDQIYDEMQKNGIKETYFLDDIESMPYLRATIAEAMRLKSVVPC
GIPHGNSNQQTTLGGYTIPKNTMILPLQYAVHMNENLWPQPQIYNPNRFIDEDGKFFTSS
HFIPFQAGKRMCLGEELAKMFLNLFAANILLNFNIKLGSDPDKLDLSGICGLTLSPPEHF
LIFEKRQRN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g2904.t3 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 2 | 369 | 0 |
| 2 | g2904.t3 | PANTHER | PTHR24300 | CYTOCHROME P450 508A4-RELATED | 2 | 362 | 0 |
| 3 | g2904.t3 | PANTHER | PTHR24300:SF308 | CYTOCHROME P450 306A1 | 2 | 362 | 0 |
| 7 | g2904.t3 | PRINTS | PR00463 | E-class P450 group I signature | 45 | 63 | 0 |
| 8 | g2904.t3 | PRINTS | PR00463 | E-class P450 group I signature | 163 | 180 | 0 |
| 14 | g2904.t3 | PRINTS | PR00385 | P450 superfamily signature | 174 | 191 | 0 |
| 10 | g2904.t3 | PRINTS | PR00463 | E-class P450 group I signature | 183 | 209 | 0 |
| 9 | g2904.t3 | PRINTS | PR00463 | E-class P450 group I signature | 225 | 243 | 0 |
| 13 | g2904.t3 | PRINTS | PR00385 | P450 superfamily signature | 226 | 237 | 0 |
| 5 | g2904.t3 | PRINTS | PR00463 | E-class P450 group I signature | 267 | 291 | 0 |
| 6 | g2904.t3 | PRINTS | PR00463 | E-class P450 group I signature | 302 | 312 | 0 |
| 11 | g2904.t3 | PRINTS | PR00385 | P450 superfamily signature | 303 | 312 | 0 |
| 4 | g2904.t3 | PRINTS | PR00463 | E-class P450 group I signature | 312 | 335 | 0 |
| 12 | g2904.t3 | PRINTS | PR00385 | P450 superfamily signature | 312 | 323 | 0 |
| 1 | g2904.t3 | Pfam | PF00067 | Cytochrome P450 | 9 | 361 | 0 |
| 15 | g2904.t3 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 9 | 366 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed