General information for g2918.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Regulator of MON1-CCZ1 complex.
Parent gene
- The parent gene g2918 is located on chr_3: 21251460..21253369 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2918 | g2918.t4 | TSS | g2918.t4 | 21251338 | 21251338 |
| chr_3 | g2918 | g2918.t4 | isoform | g2918.t4 | 21251460 | 21253369 |
| chr_3 | g2918 | g2918.t4 | exon | g2918.t4.exon1 | 21251460 | 21251735 |
| chr_3 | g2918 | g2918.t4 | exon | g2918.t4.exon2 | 21251796 | 21253369 |
| chr_3 | g2918 | g2918.t4 | cds | g2918.t4.CDS1 | 21251882 | 21253369 |
| chr_3 | g2918 | g2918.t4 | TTS | g2918.t4 | 21254346 | 21254346 |
Sequences
>g2918.t4 Gene=g2918 Length=1850
TTAATCAATTAACAAACGTTTATTATGACGAGTGTAGGTCTCAAATTTTCATAGTAAAAT
CTGCATCGATTTCAGTAAAAAGTTTAGATAGCAAGAATGGAAATTTTTCCTTTAATTTAC
AGTCTAATAATGCAAATTTAATTGCAATAAAGTTTTCTGAAAATAATAATGTTCTTGCTG
TACAAAGAACTGAAAATAATTTGGAATTGATTGGATTTAAAAATAACCAACTACAGCCTA
ATCAAATCATTTACTATGAGACTAAACAAAAGCAAGGAACAATTATATATGGTTTCATAT
GGACCGAACATGATGAGTTTTTGATTGTGACTGCTGATTATGTTGAAATTTTTCAAATCA
ATATGGCTAAAAGGCAAATGAAATCATTGAAATCGTTATCAGTATCGAGCAATTTCTTCT
GTTATAGATCAAATTTTTTATTGCTCTCATCCAATAATGGCTTAATATTAACGCCTATTT
TAATAAAACAAGGAAGCTTAACTAAACTCTCACCAATTCAAATCGAAGATGGACAGTCAA
TAACTGAACGTGATATAGTAATGGCTAAAATATATAATGATCCAGCTATTTTAATATTGA
AGACCACACGAAATAGAACATTAGAAATTTTTGTATATCTCTTAGAAGTACCAACATTTA
AGAAGAAGCATGTATTGAAACTATCATTGAATGGAAGGTGTGCTATAAGTTGCATTGATT
CAATTATAATTGTGCATCATCAAACTTCGAAGGTGAGTTTACTCTTTGATATTGCTTTGA
ATGAGGATACAGACCCAATTGACAAAAGCGTGATGATTCATCATCCATTAGTATTGGCAA
AATCAATTAAGCCATTTTGTGTGAAGATACCATCAGTTTCGTTAAAAAATGAAGTGATGA
ATTTTGAGCTTTATTCTGTTAATTGGGTTATATTTTGTGATATAATTATTGATGTAAAAT
TGGGCTATCTATTTCAATTGGAACTGGATATAACGAAAGTTCAAATAGGCGATAAAATCA
AACTCATAGATTTCCTTATGCATCGACAAAATGCAAAAATACATTTGTTATCAGTATTGT
CACAACTCATCACAAGTGACTATGAAGAAATTAATTTGCCTATGCTAGAGATAATTTTTG
ATAAACTCAACAAAGTATATAAGCAAAAGTTGGATTATGACATGTCTAAATTAGAAGCAT
TACCATCACCATCAGGTTTCAAATCTTTCACTACTCCATCAACATCAGCAATAGATAAGC
CAAAAGAGGCTGTTGTGATTGAACAAAATGATATTTTACAAATTTTTAATGCAATTTTTG
ACAAAAGTGTACTGGAAAAAATCTTGATGGCTTATATTTACTCTTTAGTAAAGAACTCAA
TCACATGCGAATATGATTTAAGCAAACAGATCGTCGTCACTTTAATTGGGAATGACAAGA
TTTATGACTTGCAGCAAATATTGAGCTTTCAAATTCTTTTAGAATCAAAACCACTTGCAT
GCTTTTTGTTATCTCTTGCAAACCATGATCCTTTAATCAGTCAAATGTCACTCGATATGC
TAAAAAGACTTGGTGCACATGAAATTATCATAGAAATTCTCTTGGAACAAGGAAAAGTGA
TTGATGCCATGCGTCTTGCAAAGCAACACACTAATATAGATCATGTTCCAGCAAGAAAAT
TCCTTGAAGCAGCTATGAAAGATGATAATAAAATGACTTTCTATAGCATCTACAACTTTT
TTATTTCAAGAAATCAACGATTGCGAGGGAATAATGAATTTTTGAAAAGTGAACAGTGTG
ATAATTTTGTTAGAATTTTTGAGCAATTATTTCCTTCTGCTACAGCGTAA
>g2918.t4 Gene=g2918 Length=495
MAKRQMKSLKSLSVSSNFFCYRSNFLLLSSNNGLILTPILIKQGSLTKLSPIQIEDGQSI
TERDIVMAKIYNDPAILILKTTRNRTLEIFVYLLEVPTFKKKHVLKLSLNGRCAISCIDS
IIIVHHQTSKVSLLFDIALNEDTDPIDKSVMIHHPLVLAKSIKPFCVKIPSVSLKNEVMN
FELYSVNWVIFCDIIIDVKLGYLFQLELDITKVQIGDKIKLIDFLMHRQNAKIHLLSVLS
QLITSDYEEINLPMLEIIFDKLNKVYKQKLDYDMSKLEALPSPSGFKSFTTPSTSAIDKP
KEAVVIEQNDILQIFNAIFDKSVLEKILMAYIYSLVKNSITCEYDLSKQIVVTLIGNDKI
YDLQQILSFQILLESKPLACFLLSLANHDPLISQMSLDMLKRLGAHEIIIEILLEQGKVI
DAMRLAKQHTNIDHVPARKFLEAAMKDDNKMTFYSIYNFFISRNQRLRGNNEFLKSEQCD
NFVRIFEQLFPSATA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2918.t4 | PANTHER | PTHR12897 | COLON CANCER-ASSOCIATED PROTEIN MIC1 | 3 | 493 | 7.3E-93 |
| 1 | g2918.t4 | Pfam | PF07035 | Colon cancer-associated protein Mic1-like | 321 | 475 | 8.1E-54 |
| 3 | g2918.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 5 | g2918.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 41 | - |
| 4 | g2918.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 42 | 495 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0035658 | Mon1-Ccz1 complex | CC |
| GO:0010506 | regulation of autophagy | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
