General information for g2924.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Inositol-3-phosphate synthase.
Parent gene
- The parent gene g2924 is located on chr_3: 21259921..21267778 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2924 | g2924.t1 | TTS | g2924.t1 | 21259729 | 21259729 |
| chr_3 | g2924 | g2924.t1 | isoform | g2924.t1 | 21259921 | 21262630 |
| chr_3 | g2924 | g2924.t1 | exon | g2924.t1.exon1 | 21259921 | 21261459 |
| chr_3 | g2924 | g2924.t1 | cds | g2924.t1.CDS1 | 21259921 | 21261459 |
| chr_3 | g2924 | g2924.t1 | exon | g2924.t1.exon2 | 21262529 | 21262630 |
| chr_3 | g2924 | g2924.t1 | cds | g2924.t1.CDS2 | 21262529 | 21262630 |
| chr_3 | g2924 | g2924.t1 | TSS | g2924.t1 | 21262786 | 21262786 |
Sequences
>g2924.t1 Gene=g2924 Length=1641
ATGGAAATATCATCACCAAATGTGAAATATTCAGAAAATTTTATTGATACCGTTTATGAT
TACAACACTACTTTTGTGGAAAAATCTAATGGAAAATTACTAGTTCATCCGATTACGAAG
AGAATTGATATACGAACGGAGCGAAATGTACCAAAGCTAGGTCTGATGTTAGTGGGTATG
GGTGGAAATAATGGATCAACTCTCATTGCTGCTCTTGAAGCTAATCGTCAAAAATTGACA
TGGCGCACAAAAGAAGGTCTAAAAGAAGCTAATTGGTTTGGATCGATCACTCAATCAGCA
ACAGTTTTACTTGGTTCAGACTTTGAGGGCAAAGATGTTTATGCACCAATGAATGAATTT
GTTCCAATGGTCAATCCTGAAAATATTATTGTTGATGGTTGGGATATCAGTTCAATGAAT
ATTGGTGATGCTATGAGGCGGGCAAAAGTATTAGATGTCAACTTGCAAGATCAACTTTAT
AAAAAACTCTCACAAATTTCTCCTCGACCATCGATTTATTTTCCAGACTTTATTGCTGCT
AATCAATTAGATCGTGCTGACAACTTGATTTTAGGCACCAAGTACGAACAGTTTATGAAA
ATTCGCGATGACATTCGTGAGTTTAAAAAGACCAATGAAGTTGATAAGGTTGTTGTTTTA
TGGACAGCTAATACTGAACGTTTTTGTGATGTACGTGAGGGTTTGAATTCTACTATGCAA
GAATTAGAGACGTCATTGAAAAATAATGAGAGCGAAATCTCACCATCAACTATTTTTGCT
ATGGCTGCAATTTTGGAAGGATGCATTTACATTAATGGTTCACCGCAAAATACTTTTGTG
CCTGGAGTAATCGAAATGGCTGAAAAATATGGAGCTTTCATTGCTGGTGATGATTTTAAA
TCAGGACAAACAAAATTAAAATCAGTACTTGTTGATTTTCTTGTTGGAGCCGGTATCAAA
CCTGTCTCTATTGTCAGCTACAATCATTTGGGCAATAATGACGGAAAGAATCTCAATTCA
CCATCACAATTTCGCTCAAAAGAAATTTCAAAGAGTAATGTTGTGGATGATATGGTTGAA
AGCAATGAAATTTTATACAAGCCAAAGGAGCATCCAGATCATTGCGTTGTTATCAAGTAT
GTGCCATATGTTGGTGATAGCAAGCGCGCAATGGATGAATACACGAGCGAAATAATGATG
GGTGGACATAACACACTTGTAATTCATAACACATGCGAAGATTCACTCTTGGCAACTCCA
TTAATTCTTGATCTCGTTATTTTGGGCGAATTGTGTTCACGAATTAAAATCAGAGATCAT
ACCAAATCAGATGCCAAATTTGAGTCGTGCAAATCAGTTCTTTCTCTTCTATCATATTTA
TGTAAAGCACCACTTGTACCAAAAGGAAGTCAAGTTGTTAATTCACTATTTCGTCAACGT
GCTGCTATTGAAAACATTTTGAGAGCTTGTGTCGGCTTGTCTCCAAACAGTCATATGGCA
CTTGAACATAGATTTGATTTTTCATCCATTCCAATCAATCAAAAAACTGTCGAATCAAGT
TTAAAATTAAATGGCTATACAAATGGATTTCATGAAGAAAAAACATCAAATGGAATTGTT
GTCGAGAATGGCATACATTAA
>g2924.t1 Gene=g2924 Length=546
MEISSPNVKYSENFIDTVYDYNTTFVEKSNGKLLVHPITKRIDIRTERNVPKLGLMLVGM
GGNNGSTLIAALEANRQKLTWRTKEGLKEANWFGSITQSATVLLGSDFEGKDVYAPMNEF
VPMVNPENIIVDGWDISSMNIGDAMRRAKVLDVNLQDQLYKKLSQISPRPSIYFPDFIAA
NQLDRADNLILGTKYEQFMKIRDDIREFKKTNEVDKVVVLWTANTERFCDVREGLNSTMQ
ELETSLKNNESEISPSTIFAMAAILEGCIYINGSPQNTFVPGVIEMAEKYGAFIAGDDFK
SGQTKLKSVLVDFLVGAGIKPVSIVSYNHLGNNDGKNLNSPSQFRSKEISKSNVVDDMVE
SNEILYKPKEHPDHCVVIKYVPYVGDSKRAMDEYTSEIMMGGHNTLVIHNTCEDSLLATP
LILDLVILGELCSRIKIRDHTKSDAKFESCKSVLSLLSYLCKAPLVPKGSQVVNSLFRQR
AAIENILRACVGLSPNSHMALEHRFDFSSIPINQKTVESSLKLNGYTNGFHEEKTSNGIV
VENGIH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2924.t1 | Coils | Coil | Coil | 232 | 252 | - |
| 6 | g2924.t1 | Gene3D | G3DSA:3.40.50.720 | - | 9 | 502 | 2.1E-246 |
| 7 | g2924.t1 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 308 | 420 | 2.1E-246 |
| 3 | g2924.t1 | PANTHER | PTHR11510 | MYO-INOSITOL-1 PHOSPHATE SYNTHASE | 2 | 504 | 5.5E-254 |
| 9 | g2924.t1 | PIRSF | PIRSF015578 | Myoinositol-ppht_synth | 41 | 505 | 4.2E-188 |
| 2 | g2924.t1 | Pfam | PF07994 | Myo-inositol-1-phosphate synthase | 53 | 488 | 4.4E-139 |
| 1 | g2924.t1 | Pfam | PF01658 | Myo-inositol-1-phosphate synthase | 302 | 415 | 7.0E-44 |
| 4 | g2924.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 504 | 1.65E-154 |
| 5 | g2924.t1 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 301 | 414 | 1.83E-41 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008654 | phospholipid biosynthetic process | BP |
| GO:0006021 | inositol biosynthetic process | BP |
| GO:0004512 | inositol-3-phosphate synthase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01858 (myo-inositol-1-phosphate synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
