Gene loci information

Transcript annotation

  • This transcript has been annotated as Inositol-3-phosphate synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2924 g2924.t9 TTS g2924.t9 21259729 21259729
chr_3 g2924 g2924.t9 isoform g2924.t9 21259921 21265380
chr_3 g2924 g2924.t9 exon g2924.t9.exon1 21259921 21261459
chr_3 g2924 g2924.t9 cds g2924.t9.CDS1 21259921 21261396
chr_3 g2924 g2924.t9 exon g2924.t9.exon2 21265316 21265380
chr_3 g2924 g2924.t9 TSS g2924.t9 21265383 21265383

Sequences

>g2924.t9 Gene=g2924 Length=1604
CGTTAGTAAAGCTTATTTGTGGCCAATCATTAAATTTAAAGTCAAGGGCGTAGAATGAAA
AAAGTGTTCATCCGATTACGAAGAGAATTGATATACGAACGGAGCGAAATGTACCAAAGC
TAGGTCTGATGTTAGTGGGTATGGGTGGAAATAATGGATCAACTCTCATTGCTGCTCTTG
AAGCTAATCGTCAAAAATTGACATGGCGCACAAAAGAAGGTCTAAAAGAAGCTAATTGGT
TTGGATCGATCACTCAATCAGCAACAGTTTTACTTGGTTCAGACTTTGAGGGCAAAGATG
TTTATGCACCAATGAATGAATTTGTTCCAATGGTCAATCCTGAAAATATTATTGTTGATG
GTTGGGATATCAGTTCAATGAATATTGGTGATGCTATGAGGCGGGCAAAAGTATTAGATG
TCAACTTGCAAGATCAACTTTATAAAAAACTCTCACAAATTTCTCCTCGACCATCGATTT
ATTTTCCAGACTTTATTGCTGCTAATCAATTAGATCGTGCTGACAACTTGATTTTAGGCA
CCAAGTACGAACAGTTTATGAAAATTCGCGATGACATTCGTGAGTTTAAAAAGACCAATG
AAGTTGATAAGGTTGTTGTTTTATGGACAGCTAATACTGAACGTTTTTGTGATGTACGTG
AGGGTTTGAATTCTACTATGCAAGAATTAGAGACGTCATTGAAAAATAATGAGAGCGAAA
TCTCACCATCAACTATTTTTGCTATGGCTGCAATTTTGGAAGGATGCATTTACATTAATG
GTTCACCGCAAAATACTTTTGTGCCTGGAGTAATCGAAATGGCTGAAAAATATGGAGCTT
TCATTGCTGGTGATGATTTTAAATCAGGACAAACAAAATTAAAATCAGTACTTGTTGATT
TTCTTGTTGGAGCCGGTATCAAACCTGTCTCTATTGTCAGCTACAATCATTTGGGCAATA
ATGACGGAAAGAATCTCAATTCACCATCACAATTTCGCTCAAAAGAAATTTCAAAGAGTA
ATGTTGTGGATGATATGGTTGAAAGCAATGAAATTTTATACAAGCCAAAGGAGCATCCAG
ATCATTGCGTTGTTATCAAGTATGTGCCATATGTTGGTGATAGCAAGCGCGCAATGGATG
AATACACGAGCGAAATAATGATGGGTGGACATAACACACTTGTAATTCATAACACATGCG
AAGATTCACTCTTGGCAACTCCATTAATTCTTGATCTCGTTATTTTGGGCGAATTGTGTT
CACGAATTAAAATCAGAGATCATACCAAATCAGATGCCAAATTTGAGTCGTGCAAATCAG
TTCTTTCTCTTCTATCATATTTATGTAAAGCACCACTTGTACCAAAAGGAAGTCAAGTTG
TTAATTCACTATTTCGTCAACGTGCTGCTATTGAAAACATTTTGAGAGCTTGTGTCGGCT
TGTCTCCAAACAGTCATATGGCACTTGAACATAGATTTGATTTTTCATCCATTCCAATCA
ATCAAAAAACTGTCGAATCAAGTTTAAAATTAAATGGCTATACAAATGGATTTCATGAAG
AAAAAACATCAAATGGAATTGTTGTCGAGAATGGCATACATTAA

>g2924.t9 Gene=g2924 Length=491
MLVGMGGNNGSTLIAALEANRQKLTWRTKEGLKEANWFGSITQSATVLLGSDFEGKDVYA
PMNEFVPMVNPENIIVDGWDISSMNIGDAMRRAKVLDVNLQDQLYKKLSQISPRPSIYFP
DFIAANQLDRADNLILGTKYEQFMKIRDDIREFKKTNEVDKVVVLWTANTERFCDVREGL
NSTMQELETSLKNNESEISPSTIFAMAAILEGCIYINGSPQNTFVPGVIEMAEKYGAFIA
GDDFKSGQTKLKSVLVDFLVGAGIKPVSIVSYNHLGNNDGKNLNSPSQFRSKEISKSNVV
DDMVESNEILYKPKEHPDHCVVIKYVPYVGDSKRAMDEYTSEIMMGGHNTLVIHNTCEDS
LLATPLILDLVILGELCSRIKIRDHTKSDAKFESCKSVLSLLSYLCKAPLVPKGSQVVNS
LFRQRAAIENILRACVGLSPNSHMALEHRFDFSSIPINQKTVESSLKLNGYTNGFHEEKT
SNGIVVENGIH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g2924.t9 Coils Coil Coil 177 197 -
7 g2924.t9 Gene3D G3DSA:3.40.50.720 - 1 447 2.0E-232
8 g2924.t9 Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 253 365 2.0E-232
3 g2924.t9 PANTHER PTHR11510:SF5 INOSITOL-3-PHOSPHATE SYNTHASE 1 1 449 7.1E-237
4 g2924.t9 PANTHER PTHR11510 MYO-INOSITOL-1 PHOSPHATE SYNTHASE 1 449 7.1E-237
10 g2924.t9 PIRSF PIRSF015578 Myoinositol-ppht_synth 1 450 3.2E-184
2 g2924.t9 Pfam PF07994 Myo-inositol-1-phosphate synthase 1 433 1.9E-137
1 g2924.t9 Pfam PF01658 Myo-inositol-1-phosphate synthase 247 360 5.9E-44
5 g2924.t9 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1 449 6.62E-140
6 g2924.t9 SUPERFAMILY SSF55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 246 359 1.57E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008654 phospholipid biosynthetic process BP
GO:0006021 inositol biosynthetic process BP
GO:0004512 inositol-3-phosphate synthase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values