Gene loci information

Transcript annotation

  • This transcript has been annotated as Hexokinase type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2925 g2925.t1 TSS g2925.t1 21267310 21267310
chr_3 g2925 g2925.t1 isoform g2925.t1 21267719 21273776
chr_3 g2925 g2925.t1 exon g2925.t1.exon1 21267719 21267778
chr_3 g2925 g2925.t1 cds g2925.t1.CDS1 21267719 21267778
chr_3 g2925 g2925.t1 exon g2925.t1.exon2 21271023 21271185
chr_3 g2925 g2925.t1 cds g2925.t1.CDS2 21271023 21271185
chr_3 g2925 g2925.t1 exon g2925.t1.exon3 21271251 21271435
chr_3 g2925 g2925.t1 cds g2925.t1.CDS3 21271251 21271435
chr_3 g2925 g2925.t1 exon g2925.t1.exon4 21271497 21271670
chr_3 g2925 g2925.t1 cds g2925.t1.CDS4 21271497 21271670
chr_3 g2925 g2925.t1 exon g2925.t1.exon5 21272698 21272797
chr_3 g2925 g2925.t1 cds g2925.t1.CDS5 21272698 21272797
chr_3 g2925 g2925.t1 exon g2925.t1.exon6 21272950 21273142
chr_3 g2925 g2925.t1 cds g2925.t1.CDS6 21272950 21273142
chr_3 g2925 g2925.t1 exon g2925.t1.exon7 21273203 21273542
chr_3 g2925 g2925.t1 cds g2925.t1.CDS7 21273203 21273542
chr_3 g2925 g2925.t1 exon g2925.t1.exon8 21273600 21273776
chr_3 g2925 g2925.t1 cds g2925.t1.CDS8 21273600 21273776
chr_3 g2925 g2925.t1 TTS g2925.t1 21274027 21274027

Sequences

>g2925.t1 Gene=g2925 Length=1392
ATGGATTTGATAAAAAATATAAAGGACATAATTATTGGAGAACGAAGTAATTCGGATCTC
ATCAAGGAAGCCTGTCAGGAGTTGATATTGGATGACAAAACAATGAGAGAAATCATGAAG
AGATTTCTTCATGAAATTCAACTTGGGTTAAAGAAAGAGACACATCCAGCAGCTGACATT
AAGTGCTTCATAACTTACGTTCAAGATTTGCCAAATGGAAAAGAAAAAGGCAGATTCCTT
GCATTGGATTTAGGTGGTACGAATTTCCGTGTCCTTCTTATTCATCTCAAAGGTGACAGT
GAGTTCGAAATGCAATCAAAGATTTACGCCATCCCACAAAGTATTATGATTGGTTCGGGA
ACACAATTGTTTGACCATATTGCTGAATGTCTTGCAAATTTCATCAAGGAACATAAACTT
CAAAATGAACGGCTGCCATTAGGTTTTACTTTCTCCTTCCCTCTTAAACAGTTAGGTTTA
ACAAAGGGTATTTTAATCAGATGGACTAAAGGTTTCAATTGTGAGGGAGTTGTTGATCGT
GATGTCGTTGAACTGTTAGAAGAGGCATTAAAAAGACGTGGAGATGTTTCTATTGAAATT
TGTGCTATTCTTAATGATACAACTGGAACTCTTATGTCATGTGCCTGGAAAAATCACAAC
TGTAAAATCGGAGCTATTGTTGGTACTGGAAGTAATGCATGTTACGTAGAGCGTGTTGAG
AATGCAGAACTTTACGATGGTCCAGCAAATGGAAAAGAATATGTGTTGATCAATACAGAG
TGGGGTGCTTTTGGTGACAATGGTGCTCTTGATTTTATTCGTACACAGTATGATCGGGAG
ATGGATGAATTTAGTATCAATAAAGGAAAACAGACAGTTGAAAAGATGATTTCGGGAATG
TATATGGGTGAATTAGTGAGACTTGCACTTGTTAGATTCACAAAAGAAGGACTTTTGTTT
GGTGGACAAGGATCTGATTTACTCTTCAAACGTTACCAATTTTTCACAAAATACGTGTCT
GAAATTGAGAGCGATAAGCCTGGAACTTTCTTTAATTGTTATGATGTGCTTGAGGAAATT
GGAATTTTCCATGCCACTGATGAGGACTGTGCAAATGTGAGATATATTTGCGAGTGCATT
TCAAGTCGTGCTGCTCATTTATCATCAGCTGGTATTGCCACGCTTATAAACAAAATGAAT
GATCCAAGTGTTACTGTCGGTGTTGATGGATCTGTCTATCGTTTCCATCCTAAATTCCAT
GATTTAATGATGGTAAAAATTCGTGAACTTGTTCATGATCACATTCAATTTGACATCATG
CTGTCTGAAGATGGGTCTGGAAGAGGAGCTGCTCTTGTTGCTGCTGTTGCTTCACGTGAT
GCACATGAATAA

>g2925.t1 Gene=g2925 Length=463
MDLIKNIKDIIIGERSNSDLIKEACQELILDDKTMREIMKRFLHEIQLGLKKETHPAADI
KCFITYVQDLPNGKEKGRFLALDLGGTNFRVLLIHLKGDSEFEMQSKIYAIPQSIMIGSG
TQLFDHIAECLANFIKEHKLQNERLPLGFTFSFPLKQLGLTKGILIRWTKGFNCEGVVDR
DVVELLEEALKRRGDVSIEICAILNDTTGTLMSCAWKNHNCKIGAIVGTGSNACYVERVE
NAELYDGPANGKEYVLINTEWGAFGDNGALDFIRTQYDREMDEFSINKGKQTVEKMISGM
YMGELVRLALVRFTKEGLLFGGQGSDLLFKRYQFFTKYVSEIESDKPGTFFNCYDVLEEI
GIFHATDEDCANVRYICECISSRAAHLSSAGIATLINKMNDPSVTVGVDGSVYRFHPKFH
DLMMVKIRELVHDHIQFDIMLSEDGSGRGAALVAAVASRDAHE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g2925.t1 CDD cd00012 NBD_sugar-kinase_HSP70_actin 80 262 1.76626E-8
15 g2925.t1 Gene3D G3DSA:3.40.367.20 - 26 443 1.3E-171
14 g2925.t1 Gene3D G3DSA:3.30.420.40 - 65 453 1.3E-171
3 g2925.t1 PANTHER PTHR19443:SF4 HEXOKINASE-2 21 460 5.9E-175
4 g2925.t1 PANTHER PTHR19443 HEXOKINASE 21 460 5.9E-175
6 g2925.t1 PRINTS PR00475 Hexokinase family signature 80 96 2.4E-71
10 g2925.t1 PRINTS PR00475 Hexokinase family signature 147 172 2.4E-71
11 g2925.t1 PRINTS PR00475 Hexokinase family signature 200 216 2.4E-71
5 g2925.t1 PRINTS PR00475 Hexokinase family signature 223 237 2.4E-71
9 g2925.t1 PRINTS PR00475 Hexokinase family signature 291 313 2.4E-71
8 g2925.t1 PRINTS PR00475 Hexokinase family signature 373 395 2.4E-71
7 g2925.t1 PRINTS PR00475 Hexokinase family signature 440 456 2.4E-71
2 g2925.t1 Pfam PF00349 Hexokinase 21 216 9.2E-72
1 g2925.t1 Pfam PF03727 Hexokinase 222 456 4.9E-83
17 g2925.t1 ProSitePatterns PS00378 Hexokinase domain signature. 147 172 -
18 g2925.t1 ProSiteProfiles PS51748 Hexokinase domain profile. 15 455 52.399
13 g2925.t1 SUPERFAMILY SSF53067 Actin-like ATPase domain 18 218 2.88E-77
12 g2925.t1 SUPERFAMILY SSF53067 Actin-like ATPase domain 220 459 6.05E-84

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001678 cellular glucose homeostasis BP
GO:0005524 ATP binding MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006096 glycolytic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0005536 glucose binding MF
GO:0004396 hexokinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values