Gene loci information

Transcript annotation

  • This transcript has been annotated as Hexokinase type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2925 g2925.t13 TSS g2925.t13 21264718 21264718
chr_3 g2925 g2925.t13 isoform g2925.t13 21264957 21273542
chr_3 g2925 g2925.t13 exon g2925.t13.exon1 21264957 21264995
chr_3 g2925 g2925.t13 cds g2925.t13.CDS1 21264957 21264995
chr_3 g2925 g2925.t13 exon g2925.t13.exon2 21271023 21271185
chr_3 g2925 g2925.t13 cds g2925.t13.CDS2 21271023 21271185
chr_3 g2925 g2925.t13 exon g2925.t13.exon3 21271251 21271435
chr_3 g2925 g2925.t13 cds g2925.t13.CDS3 21271251 21271435
chr_3 g2925 g2925.t13 exon g2925.t13.exon4 21271497 21271670
chr_3 g2925 g2925.t13 cds g2925.t13.CDS4 21271497 21271670
chr_3 g2925 g2925.t13 exon g2925.t13.exon5 21272698 21272797
chr_3 g2925 g2925.t13 cds g2925.t13.CDS5 21272698 21272797
chr_3 g2925 g2925.t13 exon g2925.t13.exon6 21272950 21273142
chr_3 g2925 g2925.t13 cds g2925.t13.CDS6 21272950 21273142
chr_3 g2925 g2925.t13 exon g2925.t13.exon7 21273203 21273542
chr_3 g2925 g2925.t13 cds g2925.t13.CDS7 21273203 21273542
chr_3 g2925 g2925.t13 TTS g2925.t13 21274027 21274027

Sequences

>g2925.t13 Gene=g2925 Length=1194
ATGTCCAAAGGTGTAGTAATGACTAAACCAACAAAAGAGATCAAGGAAGCCTGTCAGGAG
TTGATATTGGATGACAAAACAATGAGAGAAATCATGAAGAGATTTCTTCATGAAATTCAA
CTTGGGTTAAAGAAAGAGACACATCCAGCAGCTGACATTAAGTGCTTCATAACTTACGTT
CAAGATTTGCCAAATGGAAAAGAAAAAGGCAGATTCCTTGCATTGGATTTAGGTGGTACG
AATTTCCGTGTCCTTCTTATTCATCTCAAAGGTGACAGTGAGTTCGAAATGCAATCAAAG
ATTTACGCCATCCCACAAAGTATTATGATTGGTTCGGGAACACAATTGTTTGACCATATT
GCTGAATGTCTTGCAAATTTCATCAAGGAACATAAACTTCAAAATGAACGGCTGCCATTA
GGTTTTACTTTCTCCTTCCCTCTTAAACAGTTAGGTTTAACAAAGGGTATTTTAATCAGA
TGGACTAAAGGTTTCAATTGTGAGGGAGTTGTTGATCGTGATGTCGTTGAACTGTTAGAA
GAGGCATTAAAAAGACGTGGAGATGTTTCTATTGAAATTTGTGCTATTCTTAATGATACA
ACTGGAACTCTTATGTCATGTGCCTGGAAAAATCACAACTGTAAAATCGGAGCTATTGTT
GGTACTGGAAGTAATGCATGTTACGTAGAGCGTGTTGAGAATGCAGAACTTTACGATGGT
CCAGCAAATGGAAAAGAATATGTGTTGATCAATACAGAGTGGGGTGCTTTTGGTGACAAT
GGTGCTCTTGATTTTATTCGTACACAGTATGATCGGGAGATGGATGAATTTAGTATCAAT
AAAGGAAAACAGACAGTTGAAAAGATGATTTCGGGAATGTATATGGGTGAATTAGTGAGA
CTTGCACTTGTTAGATTCACAAAAGAAGGACTTTTGTTTGGTGGACAAGGATCTGATTTA
CTCTTCAAACGTTACCAATTTTTCACAAAATACGTGTCTGAAATTGAGAGCGATAAGCCT
GGAACTTTCTTTAATTGTTATGATGTGCTTGAGGAAATTGGAATTTTCCATGCCACTGAT
GAGGACTGTGCAAATGTGAGATATATTTGCGAGTGCATTTCAAGTCGTGCTGCTCATTTA
TCATCAGCTGGTATTGCCACGCTTATAAACAAAATGAATGATCCAAGTGTTACT

>g2925.t13 Gene=g2925 Length=398
MSKGVVMTKPTKEIKEACQELILDDKTMREIMKRFLHEIQLGLKKETHPAADIKCFITYV
QDLPNGKEKGRFLALDLGGTNFRVLLIHLKGDSEFEMQSKIYAIPQSIMIGSGTQLFDHI
AECLANFIKEHKLQNERLPLGFTFSFPLKQLGLTKGILIRWTKGFNCEGVVDRDVVELLE
EALKRRGDVSIEICAILNDTTGTLMSCAWKNHNCKIGAIVGTGSNACYVERVENAELYDG
PANGKEYVLINTEWGAFGDNGALDFIRTQYDREMDEFSINKGKQTVEKMISGMYMGELVR
LALVRFTKEGLLFGGQGSDLLFKRYQFFTKYVSEIESDKPGTFFNCYDVLEEIGIFHATD
EDCANVRYICECISSRAAHLSSAGIATLINKMNDPSVT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g2925.t13 CDD cd00012 NBD_sugar-kinase_HSP70_actin 73 255 2.59157E-9
14 g2925.t13 Gene3D G3DSA:3.40.367.20 - 19 394 3.0E-152
13 g2925.t13 Gene3D G3DSA:3.30.420.40 - 58 209 3.0E-152
3 g2925.t13 PANTHER PTHR19443:SF4 HEXOKINASE-2 11 393 2.2E-154
4 g2925.t13 PANTHER PTHR19443 HEXOKINASE 11 393 2.2E-154
8 g2925.t13 PRINTS PR00475 Hexokinase family signature 73 89 6.2E-61
7 g2925.t13 PRINTS PR00475 Hexokinase family signature 140 165 6.2E-61
5 g2925.t13 PRINTS PR00475 Hexokinase family signature 193 209 6.2E-61
6 g2925.t13 PRINTS PR00475 Hexokinase family signature 216 230 6.2E-61
10 g2925.t13 PRINTS PR00475 Hexokinase family signature 284 306 6.2E-61
9 g2925.t13 PRINTS PR00475 Hexokinase family signature 366 388 6.2E-61
2 g2925.t13 Pfam PF00349 Hexokinase 14 209 4.0E-72
1 g2925.t13 Pfam PF03727 Hexokinase 215 394 2.3E-62
16 g2925.t13 ProSitePatterns PS00378 Hexokinase domain signature. 140 165 -
17 g2925.t13 ProSiteProfiles PS51748 Hexokinase domain profile. 8 398 46.646
12 g2925.t13 SUPERFAMILY SSF53067 Actin-like ATPase domain 6 211 5.19E-78
11 g2925.t13 SUPERFAMILY SSF53067 Actin-like ATPase domain 213 396 3.74E-62

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001678 cellular glucose homeostasis BP
GO:0005524 ATP binding MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006096 glycolytic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0005536 glucose binding MF
GO:0004396 hexokinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values