Gene loci information

Transcript annotation

  • This transcript has been annotated as Hexokinase type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2925 g2925.t19 TSS g2925.t19 21264718 21264718
chr_3 g2925 g2925.t19 isoform g2925.t19 21264957 21274711
chr_3 g2925 g2925.t19 exon g2925.t19.exon1 21264957 21264995
chr_3 g2925 g2925.t19 exon g2925.t19.exon2 21271023 21271180
chr_3 g2925 g2925.t19 cds g2925.t19.CDS1 21271177 21271180
chr_3 g2925 g2925.t19 exon g2925.t19.exon3 21271251 21271435
chr_3 g2925 g2925.t19 cds g2925.t19.CDS2 21271251 21271435
chr_3 g2925 g2925.t19 exon g2925.t19.exon4 21271497 21271670
chr_3 g2925 g2925.t19 cds g2925.t19.CDS3 21271497 21271670
chr_3 g2925 g2925.t19 exon g2925.t19.exon5 21272698 21272797
chr_3 g2925 g2925.t19 cds g2925.t19.CDS4 21272698 21272797
chr_3 g2925 g2925.t19 exon g2925.t19.exon6 21272950 21273029
chr_3 g2925 g2925.t19 cds g2925.t19.CDS5 21272950 21273029
chr_3 g2925 g2925.t19 exon g2925.t19.exon7 21274572 21274711
chr_3 g2925 g2925.t19 cds g2925.t19.CDS6 21274572 21274595
chr_3 g2925 g2925.t19 TTS g2925.t19 21275303 21275303

Sequences

>g2925.t19 Gene=g2925 Length=876
ATGTCCAAAGGTGTAGTAATGACTAAACCAACAAAAGAGATCAAGGAAGCCTGTCAGGAG
TTGATATTGGATGACAAAACAATGAGAGAAATCATGAAGAGATTTCTTCATGAAATTCAA
CTTGGGTTAAAGAAAGAGACACATCCAGCAGCTGACATTAAGTGCTTCATAACTTACGTT
CAAGATTTGCCAAATGGAAAAAGGCAGATTCCTTGCATTGGATTTAGGTGGTACGAATTT
CCGTGTCCTTCTTATTCATCTCAAAGGTGACAGTGAGTTCGAAATGCAATCAAAGATTTA
CGCCATCCCACAAAGTATTATGATTGGTTCGGGAACACAATTGTTTGACCATATTGCTGA
ATGTCTTGCAAATTTCATCAAGGAACATAAACTTCAAAATGAACGGCTGCCATTAGGTTT
TACTTTCTCCTTCCCTCTTAAACAGTTAGGTTTAACAAAGGGTATTTTAATCAGATGGAC
TAAAGGTTTCAATTGTGAGGGAGTTGTTGATCGTGATGTCGTTGAACTGTTAGAAGAGGC
ATTAAAAAGACGTGGAGATGTTTCTATTGAAATTTGTGCTATTCTTAATGATACAACTGG
AACTCTTATGTCATGTGCCTGGAAAAATCACAACTGTAAAATCGGAGCTATTGTTGGTAC
TGGAAGTAATGCATGTTACGTAGAGCGTGTTGAGAATGCAGAACTTTACGATGGTCCAGC
AAATGGAAAAGAATATTTAAGTTACTTAATCAAAATATAGAGAAAAGAAGAGTCGTTATA
TCTTTGTAAAAACTATAAAGATTTGTTTTTTGGAGGGATACAGGCAACGATCCTTGCGAT
GAAAAAATAAAAAGCAGACTGGATCTAAATAATTTT

>g2925.t19 Gene=g2925 Length=188
MEKGRFLALDLGGTNFRVLLIHLKGDSEFEMQSKIYAIPQSIMIGSGTQLFDHIAECLAN
FIKEHKLQNERLPLGFTFSFPLKQLGLTKGILIRWTKGFNCEGVVDRDVVELLEEALKRR
GDVSIEICAILNDTTGTLMSCAWKNHNCKIGAIVGTGSNACYVERVENAELYDGPANGKE
YLSYLIKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g2925.t19 CDD cd00012 NBD_sugar-kinase_HSP70_actin 7 164 4.65141E-9
11 g2925.t19 Gene3D G3DSA:3.30.420.40 - 2 143 2.8E-80
12 g2925.t19 Gene3D G3DSA:3.40.367.20 - 144 175 2.8E-80
3 g2925.t19 PANTHER PTHR19443:SF4 HEXOKINASE-2 2 174 8.7E-84
4 g2925.t19 PANTHER PTHR19443 HEXOKINASE 2 174 8.7E-84
7 g2925.t19 PRINTS PR00475 Hexokinase family signature 7 23 6.5E-38
6 g2925.t19 PRINTS PR00475 Hexokinase family signature 74 99 6.5E-38
8 g2925.t19 PRINTS PR00475 Hexokinase family signature 127 143 6.5E-38
5 g2925.t19 PRINTS PR00475 Hexokinase family signature 150 164 6.5E-38
2 g2925.t19 Pfam PF00349 Hexokinase 2 143 2.1E-57
1 g2925.t19 Pfam PF03727 Hexokinase 149 174 6.0E-6
14 g2925.t19 ProSitePatterns PS00378 Hexokinase domain signature. 74 99 -
15 g2925.t19 ProSiteProfiles PS51748 Hexokinase domain profile. 1 188 25.958
9 g2925.t19 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 145 5.71E-62
10 g2925.t19 SUPERFAMILY SSF53067 Actin-like ATPase domain 147 175 1.78E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001678 cellular glucose homeostasis BP
GO:0005524 ATP binding MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006096 glycolytic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0005536 glucose binding MF
GO:0004396 hexokinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values