Gene loci information

Transcript annotation

  • This transcript has been annotated as Hexokinase type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2925 g2925.t31 TSS g2925.t31 21267310 21267310
chr_3 g2925 g2925.t31 isoform g2925.t31 21267719 21275311
chr_3 g2925 g2925.t31 exon g2925.t31.exon1 21267719 21267778
chr_3 g2925 g2925.t31 cds g2925.t31.CDS1 21267719 21267778
chr_3 g2925 g2925.t31 exon g2925.t31.exon2 21271023 21271185
chr_3 g2925 g2925.t31 cds g2925.t31.CDS2 21271023 21271185
chr_3 g2925 g2925.t31 exon g2925.t31.exon3 21271251 21271435
chr_3 g2925 g2925.t31 cds g2925.t31.CDS3 21271251 21271435
chr_3 g2925 g2925.t31 exon g2925.t31.exon4 21271497 21271670
chr_3 g2925 g2925.t31 cds g2925.t31.CDS4 21271497 21271670
chr_3 g2925 g2925.t31 exon g2925.t31.exon5 21271942 21272041
chr_3 g2925 g2925.t31 cds g2925.t31.CDS5 21271942 21272041
chr_3 g2925 g2925.t31 exon g2925.t31.exon6 21272950 21273142
chr_3 g2925 g2925.t31 cds g2925.t31.CDS6 21272950 21273142
chr_3 g2925 g2925.t31 exon g2925.t31.exon7 21273203 21273542
chr_3 g2925 g2925.t31 cds g2925.t31.CDS7 21273203 21273542
chr_3 g2925 g2925.t31 exon g2925.t31.exon8 21273600 21275311
chr_3 g2925 g2925.t31 cds g2925.t31.CDS8 21273600 21273776
chr_3 g2925 g2925.t31 TTS g2925.t31 21275303 21275303

Sequences

>g2925.t31 Gene=g2925 Length=2927
ATGGATTTGATAAAAAATATAAAGGACATAATTATTGGAGAACGAAGTAATTCGGATCTC
ATCAAGGAAGCCTGTCAGGAGTTGATATTGGATGACAAAACAATGAGAGAAATCATGAAG
AGATTTCTTCATGAAATTCAACTTGGGTTAAAGAAAGAGACACATCCAGCAGCTGACATT
AAGTGCTTCATAACTTACGTTCAAGATTTGCCAAATGGAAAAGAAAAAGGCAGATTCCTT
GCATTGGATTTAGGTGGTACGAATTTCCGTGTCCTTCTTATTCATCTCAAAGGTGACAGT
GAGTTCGAAATGCAATCAAAGATTTACGCCATCCCACAAAGTATTATGATTGGTTCGGGA
ACACAATTGTTTGACCATATTGCTGAATGTCTTGCAAATTTCATCAAGGAACATAAACTT
CAAAATGAACGGCTGCCATTAGGTTTTACTTTCTCCTTCCCTCTTAAACAGTTAGGTTTA
ACAAAGGGTATTTTAATCAGATGGACTAAAGGTTTCAATTGTGAGGGAGTTGTTGATCGT
GATGTCGTTGAACTGTTAGAAGAGGCATTAAAAAGACGTGGAGATGTAAGAATCGCGGTG
ATGGCAGTATTGAATGATTCAACGGGAACACTAATGTCATGTGCGCACAAAAATCTAAAT
TGTAAAATTGGTGTTATCATTGGTACTGGAAGTAATGCATGTTACGTAGAGCGTGTTGAG
AATGCAGAACTTTACGATGGTCCAGCAAATGGAAAAGAATATGTGTTGATCAATACAGAG
TGGGGTGCTTTTGGTGACAATGGTGCTCTTGATTTTATTCGTACACAGTATGATCGGGAG
ATGGATGAATTTAGTATCAATAAAGGAAAACAGACAGTTGAAAAGATGATTTCGGGAATG
TATATGGGTGAATTAGTGAGACTTGCACTTGTTAGATTCACAAAAGAAGGACTTTTGTTT
GGTGGACAAGGATCTGATTTACTCTTCAAACGTTACCAATTTTTCACAAAATACGTGTCT
GAAATTGAGAGCGATAAGCCTGGAACTTTCTTTAATTGTTATGATGTGCTTGAGGAAATT
GGAATTTTCCATGCCACTGATGAGGACTGTGCAAATGTGAGATATATTTGCGAGTGCATT
TCAAGTCGTGCTGCTCATTTATCATCAGCTGGTATTGCCACGCTTATAAACAAAATGAAT
GATCCAAGTGTTACTGTCGGTGTTGATGGATCTGTCTATCGTTTCCATCCTAAATTCCAT
GATTTAATGATGGTAAAAATTCGTGAACTTGTTCATGATCACATTCAATTTGACATCATG
CTGTCTGAAGATGGGTCTGGAAGAGGAGCTGCTCTTGTTGCTGCTGTTGCTTCACGTGAT
GCACATGAATAAGACTCTTATGTGTAATGAGAATCTTTAAACAAAATAACTCTCGAGACG
AACAATTCTGAAACGGGAGTCTAAATCATTTTAATTTTTAGTTGTAAGAATCAAAAAGTG
TTTAAATTTTATTGTTTTGTATTAGTTCTTAGTATGTAGTCGTATGCAATGTGGAGTGCA
TGGATATTTTTGTAAAAAATCTCTTGTGAATCGCTCGATTTTGAGGTTGATGCAAAAAAA
ATAAATTTTTTATTATTTATTATAATTTTTCTTGTCGTACTCTTCATTTCAAAACAAGAT
CATACATATAGTTCCAACTGATAAAAAAATATTAAAATAACCTTTTAAAGAAGCAATAAC
TTTAACATCCAGCCGATTACAAAAAATTAAAAATCAAATGAAGAGGGCAGAATCAAAAAA
AAAAAAAGAGTGAATGTGGCAAAGCATTATATAAGAAGAGTGAAACTATGATTTTTATTA
AACTGTAAGACTAGATTCTATAATTTAGTTGCTAGATAAAACACAAATTTAAAATTGTGT
AAAAAATTTTCATACAAATTCTATAGGCATGTTTATAAGTTTTTTTGTTGCTCTCCTGTT
ATCATTTATATATCTATGTAATTTTAAACAATTGGATTTTTTTAAAATCAAACTCACTTG
TCTAAATTATAAACTGAAAATTTTCGTTTAATTTTGTTCTTTTTAATTAAAGGCAAAAAT
ATTCAACGAATAAAATAAAACACAAAAAGGCCCAAAAAAGAATTTTTCTTGAAATTTGAA
TCGGGATAGTGTGCAAAAAAGTGATAGTTAAGTTACTTAATCAAAATATAGAGAAAAGAA
GAGTCGTTATATCTTTGTAAAAACTATAAAGATTTGTTTTTTGGAGGGATACAGGCAACG
ATCCTTGCGATGAAAAAATAAAAAGCAGACTGGATCTAAATAATTTTTAATAACTATTTT
AAATTTAATTTAACTTTCAATCTTCAATGCGCCACATATCCTGGAGAATAATATTTAAAG
AGTCAATTGCGAATGAGTAGTCATGCAAGCAGCTTATTATGGTTTCTGAAGAATTGTCAA
AAATATTTATATCGTAAACTTAGTTTAGTTTTTGAGTTAATTGTACCTAATTGTATACGT
TTATTTTGGAAAAATATTATACATAAAAATTTCTTCAATTTAATTGCTTCATGGACTAAA
TGTATAATAAAATAGTTGAAATGCGAAAGAGAGAGAGTAAGAAAAAAGTTCGTTTCTAAA
TCAATAAAAAAGATAAATCATACTATGTAATCTCTCAATAATCAATTTCAGTTTTTAGAG
ATTTTATGAGAGGAAAGATTCTCTTTCGATAAAACTATATTTTATATATAAAAGAAATAT
ATCATTCTTTTGATTGCAACATACCTACTGTTATTTTATGGGGTTGAAGAAAGAATTACA
TAAAACCATTAAAATGGAGAAAAAAAATTAGAAAATGCAAATAATGATACTATTTCATTA
TATTGTATGTTAATAAAATTGAATAAATGATATAAAATTTAAAAAAA

>g2925.t31 Gene=g2925 Length=463
MDLIKNIKDIIIGERSNSDLIKEACQELILDDKTMREIMKRFLHEIQLGLKKETHPAADI
KCFITYVQDLPNGKEKGRFLALDLGGTNFRVLLIHLKGDSEFEMQSKIYAIPQSIMIGSG
TQLFDHIAECLANFIKEHKLQNERLPLGFTFSFPLKQLGLTKGILIRWTKGFNCEGVVDR
DVVELLEEALKRRGDVRIAVMAVLNDSTGTLMSCAHKNLNCKIGVIIGTGSNACYVERVE
NAELYDGPANGKEYVLINTEWGAFGDNGALDFIRTQYDREMDEFSINKGKQTVEKMISGM
YMGELVRLALVRFTKEGLLFGGQGSDLLFKRYQFFTKYVSEIESDKPGTFFNCYDVLEEI
GIFHATDEDCANVRYICECISSRAAHLSSAGIATLINKMNDPSVTVGVDGSVYRFHPKFH
DLMMVKIRELVHDHIQFDIMLSEDGSGRGAALVAAVASRDAHE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g2925.t31 CDD cd00012 NBD_sugar-kinase_HSP70_actin 80 262 6.79142E-9
15 g2925.t31 Gene3D G3DSA:3.40.367.20 - 26 443 6.1E-170
14 g2925.t31 Gene3D G3DSA:3.30.420.40 - 65 453 6.1E-170
3 g2925.t31 PANTHER PTHR19443:SF4 HEXOKINASE-2 21 460 2.7E-172
4 g2925.t31 PANTHER PTHR19443 HEXOKINASE 21 460 2.7E-172
6 g2925.t31 PRINTS PR00475 Hexokinase family signature 80 96 2.8E-71
10 g2925.t31 PRINTS PR00475 Hexokinase family signature 147 172 2.8E-71
11 g2925.t31 PRINTS PR00475 Hexokinase family signature 200 216 2.8E-71
5 g2925.t31 PRINTS PR00475 Hexokinase family signature 223 237 2.8E-71
9 g2925.t31 PRINTS PR00475 Hexokinase family signature 291 313 2.8E-71
8 g2925.t31 PRINTS PR00475 Hexokinase family signature 373 395 2.8E-71
7 g2925.t31 PRINTS PR00475 Hexokinase family signature 440 456 2.8E-71
2 g2925.t31 Pfam PF00349 Hexokinase 21 215 2.8E-70
1 g2925.t31 Pfam PF03727 Hexokinase 222 456 3.8E-83
17 g2925.t31 ProSitePatterns PS00378 Hexokinase domain signature. 147 172 -
18 g2925.t31 ProSiteProfiles PS51748 Hexokinase domain profile. 15 455 51.85
12 g2925.t31 SUPERFAMILY SSF53067 Actin-like ATPase domain 18 217 9.36E-76
13 g2925.t31 SUPERFAMILY SSF53067 Actin-like ATPase domain 220 459 2.52E-84

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001678 cellular glucose homeostasis BP
GO:0005524 ATP binding MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006096 glycolytic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0005536 glucose binding MF
GO:0004396 hexokinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values