Gene loci information

Transcript annotation

  • This transcript has been annotated as Hexokinase type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2925 g2925.t34 isoform g2925.t34 21271288 21274145
chr_3 g2925 g2925.t34 exon g2925.t34.exon1 21271288 21271435
chr_3 g2925 g2925.t34 cds g2925.t34.CDS1 21271337 21271435
chr_3 g2925 g2925.t34 exon g2925.t34.exon2 21271497 21271670
chr_3 g2925 g2925.t34 cds g2925.t34.CDS2 21271497 21271670
chr_3 g2925 g2925.t34 exon g2925.t34.exon3 21272698 21272797
chr_3 g2925 g2925.t34 cds g2925.t34.CDS3 21272698 21272797
chr_3 g2925 g2925.t34 exon g2925.t34.exon4 21272950 21273142
chr_3 g2925 g2925.t34 cds g2925.t34.CDS4 21272950 21273142
chr_3 g2925 g2925.t34 exon g2925.t34.exon5 21273203 21273542
chr_3 g2925 g2925.t34 cds g2925.t34.CDS5 21273203 21273542
chr_3 g2925 g2925.t34 exon g2925.t34.exon6 21273600 21274145
chr_3 g2925 g2925.t34 cds g2925.t34.CDS6 21273600 21273776
chr_3 g2925 g2925.t34 TTS g2925.t34 21274517 21274517
chr_3 g2925 g2925.t34 TSS g2925.t34 NA NA

Sequences

>g2925.t34 Gene=g2925 Length=1501
GAATTTCCGTGTCCTTCTTATTCATCTCAAAGGTGACAGTGAGTTCGAAATGCAATCAAA
GATTTACGCCATCCCACAAAGTATTATGATTGGTTCGGGAACACAATTGTTTGACCATAT
TGCTGAATGTCTTGCAAATTTCATCAAGGAACATAAACTTCAAAATGAACGGCTGCCATT
AGGTTTTACTTTCTCCTTCCCTCTTAAACAGTTAGGTTTAACAAAGGGTATTTTAATCAG
ATGGACTAAAGGTTTCAATTGTGAGGGAGTTGTTGATCGTGATGTCGTTGAACTGTTAGA
AGAGGCATTAAAAAGACGTGGAGATGTTTCTATTGAAATTTGTGCTATTCTTAATGATAC
AACTGGAACTCTTATGTCATGTGCCTGGAAAAATCACAACTGTAAAATCGGAGCTATTGT
TGGTACTGGAAGTAATGCATGTTACGTAGAGCGTGTTGAGAATGCAGAACTTTACGATGG
TCCAGCAAATGGAAAAGAATATGTGTTGATCAATACAGAGTGGGGTGCTTTTGGTGACAA
TGGTGCTCTTGATTTTATTCGTACACAGTATGATCGGGAGATGGATGAATTTAGTATCAA
TAAAGGAAAACAGACAGTTGAAAAGATGATTTCGGGAATGTATATGGGTGAATTAGTGAG
ACTTGCACTTGTTAGATTCACAAAAGAAGGACTTTTGTTTGGTGGACAAGGATCTGATTT
ACTCTTCAAACGTTACCAATTTTTCACAAAATACGTGTCTGAAATTGAGAGCGATAAGCC
TGGAACTTTCTTTAATTGTTATGATGTGCTTGAGGAAATTGGAATTTTCCATGCCACTGA
TGAGGACTGTGCAAATGTGAGATATATTTGCGAGTGCATTTCAAGTCGTGCTGCTCATTT
ATCATCAGCTGGTATTGCCACGCTTATAAACAAAATGAATGATCCAAGTGTTACTGTCGG
TGTTGATGGATCTGTCTATCGTTTCCATCCTAAATTCCATGATTTAATGATGGTAAAAAT
TCGTGAACTTGTTCATGATCACATTCAATTTGACATCATGCTGTCTGAAGATGGGTCTGG
AAGAGGAGCTGCTCTTGTTGCTGCTGTTGCTTCACGTGATGCACATGAATAAGACTCTTA
TGTGTAATGAGAATCTTTAAACAAAATAACTCTCGAGACGAACAATTCTGAAACGGGAGT
CTAAATCATTTTAATTTTTAGTTGTAAGAATCAAAAAGTGTTTAAATTTTATTGTTTTGT
ATTAGTTCTTAGTATGTAGTCGTATGCAATGTGGAGTGCATGGATATTTTTGTAAAAAAT
CTCTTGTGAATCGCTCGATTTTGAGGTTGATGCAAAAAAAATAAATTTTTTATTATTTAT
TATAATTTTTCTTGTCGTACTCTTCATTTCAAAACAAGATCATACATATAGTTCCAACTG
ATAAAAAAATATTAAAATAACCTTTTAAAGAAGCAATAACTTTAACATCCAGCCGATTAC
A

>g2925.t34 Gene=g2925 Length=360
MQSKIYAIPQSIMIGSGTQLFDHIAECLANFIKEHKLQNERLPLGFTFSFPLKQLGLTKG
ILIRWTKGFNCEGVVDRDVVELLEEALKRRGDVSIEICAILNDTTGTLMSCAWKNHNCKI
GAIVGTGSNACYVERVENAELYDGPANGKEYVLINTEWGAFGDNGALDFIRTQYDREMDE
FSINKGKQTVEKMISGMYMGELVRLALVRFTKEGLLFGGQGSDLLFKRYQFFTKYVSEIE
SDKPGTFFNCYDVLEEIGIFHATDEDCANVRYICECISSRAAHLSSAGIATLINKMNDPS
VTVGVDGSVYRFHPKFHDLMMVKIRELVHDHIQFDIMLSEDGSGRGAALVAAVASRDAHE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g2925.t34 CDD cd00012 NBD_sugar-kinase_HSP70_actin 14 159 0.00290535
13 g2925.t34 Gene3D G3DSA:3.30.420.40 - 1 352 1.3E-140
14 g2925.t34 Gene3D G3DSA:3.40.367.20 - 118 340 1.3E-140
3 g2925.t34 PANTHER PTHR19443:SF4 HEXOKINASE-2 1 357 1.4E-144
4 g2925.t34 PANTHER PTHR19443 HEXOKINASE 1 357 1.4E-144
7 g2925.t34 PRINTS PR00475 Hexokinase family signature 44 69 7.7E-61
8 g2925.t34 PRINTS PR00475 Hexokinase family signature 97 113 7.7E-61
9 g2925.t34 PRINTS PR00475 Hexokinase family signature 120 134 7.7E-61
5 g2925.t34 PRINTS PR00475 Hexokinase family signature 188 210 7.7E-61
6 g2925.t34 PRINTS PR00475 Hexokinase family signature 270 292 7.7E-61
10 g2925.t34 PRINTS PR00475 Hexokinase family signature 337 353 7.7E-61
2 g2925.t34 Pfam PF00349 Hexokinase 2 113 7.7E-41
1 g2925.t34 Pfam PF03727 Hexokinase 119 353 2.5E-83
16 g2925.t34 ProSitePatterns PS00378 Hexokinase domain signature. 44 69 -
17 g2925.t34 ProSiteProfiles PS51748 Hexokinase domain profile. 1 352 43.679
12 g2925.t34 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 115 2.71E-45
11 g2925.t34 SUPERFAMILY SSF53067 Actin-like ATPase domain 117 356 3.63E-84

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001678 cellular glucose homeostasis BP
GO:0005524 ATP binding MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006096 glycolytic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0005536 glucose binding MF
GO:0004396 hexokinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values