Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Hexokinase type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2925 g2925.t6 TSS g2925.t6 21264718 21264718
chr_3 g2925 g2925.t6 isoform g2925.t6 21264957 21271670
chr_3 g2925 g2925.t6 exon g2925.t6.exon1 21264957 21264995
chr_3 g2925 g2925.t6 cds g2925.t6.CDS1 21264957 21264995
chr_3 g2925 g2925.t6 exon g2925.t6.exon2 21271023 21271185
chr_3 g2925 g2925.t6 cds g2925.t6.CDS2 21271023 21271185
chr_3 g2925 g2925.t6 exon g2925.t6.exon3 21271251 21271435
chr_3 g2925 g2925.t6 cds g2925.t6.CDS3 21271251 21271435
chr_3 g2925 g2925.t6 exon g2925.t6.exon4 21271497 21271670
chr_3 g2925 g2925.t6 cds g2925.t6.CDS4 21271497 21271670
chr_3 g2925 g2925.t6 TTS g2925.t6 NA NA

Sequences

>g2925.t6 Gene=g2925 Length=561
ATGTCCAAAGGTGTAGTAATGACTAAACCAACAAAAGAGATCAAGGAAGCCTGTCAGGAG
TTGATATTGGATGACAAAACAATGAGAGAAATCATGAAGAGATTTCTTCATGAAATTCAA
CTTGGGTTAAAGAAAGAGACACATCCAGCAGCTGACATTAAGTGCTTCATAACTTACGTT
CAAGATTTGCCAAATGGAAAAGAAAAAGGCAGATTCCTTGCATTGGATTTAGGTGGTACG
AATTTCCGTGTCCTTCTTATTCATCTCAAAGGTGACAGTGAGTTCGAAATGCAATCAAAG
ATTTACGCCATCCCACAAAGTATTATGATTGGTTCGGGAACACAATTGTTTGACCATATT
GCTGAATGTCTTGCAAATTTCATCAAGGAACATAAACTTCAAAATGAACGGCTGCCATTA
GGTTTTACTTTCTCCTTCCCTCTTAAACAGTTAGGTTTAACAAAGGGTATTTTAATCAGA
TGGACTAAAGGTTTCAATTGTGAGGGAGTTGTTGATCGTGATGTCGTTGAACTGTTAGAA
GAGGCATTAAAAAGACGTGGA

>g2925.t6 Gene=g2925 Length=187
MSKGVVMTKPTKEIKEACQELILDDKTMREIMKRFLHEIQLGLKKETHPAADIKCFITYV
QDLPNGKEKGRFLALDLGGTNFRVLLIHLKGDSEFEMQSKIYAIPQSIMIGSGTQLFDHI
AECLANFIKEHKLQNERLPLGFTFSFPLKQLGLTKGILIRWTKGFNCEGVVDRDVVELLE
EALKRRG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2925.t6 CDD cd00012 NBD_sugar-kinase_HSP70_actin 73 161 4.5476E-6
7 g2925.t6 Gene3D G3DSA:3.30.420.40 - 46 187 1.2E-59
2 g2925.t6 PANTHER PTHR19443:SF4 HEXOKINASE-2 11 187 3.7E-69
3 g2925.t6 PANTHER PTHR19443 HEXOKINASE 11 187 3.7E-69
5 g2925.t6 PRINTS PR00475 Hexokinase family signature 73 89 4.7E-20
4 g2925.t6 PRINTS PR00475 Hexokinase family signature 140 165 4.7E-20
1 g2925.t6 Pfam PF00349 Hexokinase 14 186 3.1E-62
9 g2925.t6 ProSitePatterns PS00378 Hexokinase domain signature. 140 165 -
10 g2925.t6 ProSiteProfiles PS51748 Hexokinase domain profile. 8 187 22.249
6 g2925.t6 SUPERFAMILY SSF53067 Actin-like ATPase domain 6 187 1.13E-67

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001678 cellular glucose homeostasis BP
GO:0005524 ATP binding MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006096 glycolytic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0005536 glucose binding MF
GO:0004396 hexokinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values