Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Hexokinase type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2925 g2925.t8 TSS g2925.t8 21264718 21264718
chr_3 g2925 g2925.t8 isoform g2925.t8 21264957 21272696
chr_3 g2925 g2925.t8 exon g2925.t8.exon1 21264957 21264995
chr_3 g2925 g2925.t8 cds g2925.t8.CDS1 21264957 21264995
chr_3 g2925 g2925.t8 exon g2925.t8.exon2 21271023 21271185
chr_3 g2925 g2925.t8 cds g2925.t8.CDS2 21271023 21271185
chr_3 g2925 g2925.t8 exon g2925.t8.exon3 21271251 21271435
chr_3 g2925 g2925.t8 cds g2925.t8.CDS3 21271251 21271435
chr_3 g2925 g2925.t8 exon g2925.t8.exon4 21271497 21271665
chr_3 g2925 g2925.t8 cds g2925.t8.CDS4 21271497 21271665
chr_3 g2925 g2925.t8 exon g2925.t8.exon5 21272526 21272696
chr_3 g2925 g2925.t8 cds g2925.t8.CDS5 21272526 21272638
chr_3 g2925 g2925.t8 TTS g2925.t8 NA NA

Sequences

>g2925.t8 Gene=g2925 Length=727
ATGTCCAAAGGTGTAGTAATGACTAAACCAACAAAAGAGATCAAGGAAGCCTGTCAGGAG
TTGATATTGGATGACAAAACAATGAGAGAAATCATGAAGAGATTTCTTCATGAAATTCAA
CTTGGGTTAAAGAAAGAGACACATCCAGCAGCTGACATTAAGTGCTTCATAACTTACGTT
CAAGATTTGCCAAATGGAAAAGAAAAAGGCAGATTCCTTGCATTGGATTTAGGTGGTACG
AATTTCCGTGTCCTTCTTATTCATCTCAAAGGTGACAGTGAGTTCGAAATGCAATCAAAG
ATTTACGCCATCCCACAAAGTATTATGATTGGTTCGGGAACACAATTGTTTGACCATATT
GCTGAATGTCTTGCAAATTTCATCAAGGAACATAAACTTCAAAATGAACGGCTGCCATTA
GGTTTTACTTTCTCCTTCCCTCTTAAACAGTTAGGTTTAACAAAGGGTATTTTAATCAGA
TGGACTAAAGGTTTCAATTGTGAGGGAGTTGTTGATCGTGATGTCGTTGAACTGTTAGAA
GAGGCATTAAAAAGACATGATTTTATATATAAATTATATGCAACAACAATGACAAAAATT
ATCAAATGCACAATCAAATTGCATGTACCACAACACTACAATCTTTCATCTTATTATTTT
GCATTATGATGATTATTTTTTATTTTGAACAAATCCAATGTCAACTTCAATATTGCGTGT
AAAAACA

>g2925.t8 Gene=g2925 Length=222
MSKGVVMTKPTKEIKEACQELILDDKTMREIMKRFLHEIQLGLKKETHPAADIKCFITYV
QDLPNGKEKGRFLALDLGGTNFRVLLIHLKGDSEFEMQSKIYAIPQSIMIGSGTQLFDHI
AECLANFIKEHKLQNERLPLGFTFSFPLKQLGLTKGILIRWTKGFNCEGVVDRDVVELLE
EALKRHDFIYKLYATTMTKIIKCTIKLHVPQHYNLSSYYFAL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2925.t8 CDD cd00012 NBD_sugar-kinase_HSP70_actin 73 161 3.76818E-6
7 g2925.t8 Gene3D G3DSA:3.30.420.40 - 46 204 1.9E-59
2 g2925.t8 PANTHER PTHR19443:SF4 HEXOKINASE-2 11 186 1.2E-68
3 g2925.t8 PANTHER PTHR19443 HEXOKINASE 11 186 1.2E-68
5 g2925.t8 PRINTS PR00475 Hexokinase family signature 73 89 6.1E-20
4 g2925.t8 PRINTS PR00475 Hexokinase family signature 140 165 6.1E-20
1 g2925.t8 Pfam PF00349 Hexokinase 14 192 7.6E-63
9 g2925.t8 ProSitePatterns PS00378 Hexokinase domain signature. 140 165 -
10 g2925.t8 ProSiteProfiles PS51748 Hexokinase domain profile. 8 222 22.585
6 g2925.t8 SUPERFAMILY SSF53067 Actin-like ATPase domain 6 188 8.46E-68

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001678 cellular glucose homeostasis BP
GO:0005524 ATP binding MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006096 glycolytic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0005536 glucose binding MF
GO:0004396 hexokinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values