Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Multiple inositol polyphosphate phosphatase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2940 g2940.t2 TSS g2940.t2 21369577 21369577
chr_3 g2940 g2940.t2 isoform g2940.t2 21369948 21371200
chr_3 g2940 g2940.t2 exon g2940.t2.exon1 21369948 21370619
chr_3 g2940 g2940.t2 cds g2940.t2.CDS1 21370435 21370619
chr_3 g2940 g2940.t2 exon g2940.t2.exon2 21370679 21370972
chr_3 g2940 g2940.t2 cds g2940.t2.CDS2 21370679 21370972
chr_3 g2940 g2940.t2 exon g2940.t2.exon3 21371029 21371200
chr_3 g2940 g2940.t2 cds g2940.t2.CDS3 21371029 21371200
chr_3 g2940 g2940.t2 TTS g2940.t2 21371270 21371270

Sequences

>g2940.t2 Gene=g2940 Length=1138
GCGACTGCCTTCAAGAGGTGATATTACCGGCATTTTAAACAACTATGAAAGACTTCATCG
TGATGTCAGTGTTAACTATAATGCGGGTAGAACTTCTCTCTGTGCTAGTGATTTTAATTT
ACTTCAGAATTGGTCATTTGATACAAATATCACACTAGATAAAGAACAATATTTGACAGT
TTCCGGATGGAATGAACTTGAAGGATTAGGACGAAGATATTCTGAAGCTTTTCCTACATT
ATTGCCAAGAAATTATTCAAGAAATGACTTTTTATTTAGGCCAACTTACAAGCAAAGGAC
ACAAGCAAGTTTAAAAGCATTTGCTGATGGTATTTTTGGTCATGATGGCCACATTCAAGT
TCAGTTTGAAGAAGTTCCCGATCCTGATTTTTTTCTTCGTCCACACGATAATTGTGAGCT
TTACGATGAAGTTATTGCAAATAAAATTGAACAAGATGCATTTCGAGATGGACCAGATTT
TCAACAAATGTTAACACAAGTCAGTCAAAAGTTAGGGTTTCATGGATCAAGACAATTAAG
AGAGAATGAAATTGATACAATAGCAAATTTATGTAAATTTGAACAAATTTGGTTTTTAGA
TGAGCCATCACCATGGTGTGTTGCTTTTTCAATCAGTAACCATGCAGTACTTGAATACCT
TGAAGATTTAGATTACTTTTGGAGAGTTGGTTATGGTTATAGAGATTTTCGAACACTTTT
TGAGAACATGAATTGTTATTTAATGCAAGACTTATTGAATTTTGTCACTTCAAATAATCC
CAATGATCACTTGGCTCGAATTTATAGTACGCACTCGACAATTTTACAATTGATAATTGT
CACATTGGGAGTGTTTGAAGATGAAGTTCAATTGACGCGTCATAATTTTGCTCAGCAGAC
TTTCAGACAGTGGAAAAGTTCTCTTATTGCACCGATGGGAACGAATTTGGCAGTCATTAA
ATATTCATGTGCAGATGGTGATGATGATTTGCTATTTTTATTCAACGAGAAGCCACTTCA
TATCAATGGATGTCAACCGAATGGTCTGTGCAAGCAGTCATTGATTGTTGAGAGATTCAG
TCACTTTATGAATGGTGATTGTCGCCAAATCTTTTGCAGTAATAACAACCGGCGCTAA

>g2940.t2 Gene=g2940 Length=216
MLTQVSQKLGFHGSRQLRENEIDTIANLCKFEQIWFLDEPSPWCVAFSISNHAVLEYLED
LDYFWRVGYGYRDFRTLFENMNCYLMQDLLNFVTSNNPNDHLARIYSTHSTILQLIIVTL
GVFEDEVQLTRHNFAQQTFRQWKSSLIAPMGTNLAVIKYSCADGDDDLLFLFNEKPLHIN
GCQPNGLCKQSLIVERFSHFMNGDCRQIFCSNNNRR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g2940.t2 CDD cd07061 HP_HAP_like 19 173 0.0e+00
5 g2940.t2 Gene3D G3DSA:3.40.50.1240 - 1 205 0.0e+00
2 g2940.t2 PANTHER PTHR20963:SF48 MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE 1 2 212 0.0e+00
3 g2940.t2 PANTHER PTHR20963 MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED 2 212 0.0e+00
1 g2940.t2 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 11 166 2.6e-05
4 g2940.t2 SUPERFAMILY SSF53254 Phosphoglycerate mutase-like 20 213 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed