Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2963 g2963.t2 TSS g2963.t2 21604744 21604744
chr_3 g2963 g2963.t2 isoform g2963.t2 21604825 21605939
chr_3 g2963 g2963.t2 exon g2963.t2.exon1 21604825 21604882
chr_3 g2963 g2963.t2 cds g2963.t2.CDS1 21604825 21604882
chr_3 g2963 g2963.t2 exon g2963.t2.exon2 21605073 21605675
chr_3 g2963 g2963.t2 cds g2963.t2.CDS2 21605073 21605675
chr_3 g2963 g2963.t2 exon g2963.t2.exon3 21605740 21605793
chr_3 g2963 g2963.t2 cds g2963.t2.CDS3 21605740 21605793
chr_3 g2963 g2963.t2 exon g2963.t2.exon4 21605857 21605939
chr_3 g2963 g2963.t2 cds g2963.t2.CDS4 21605857 21605939
chr_3 g2963 g2963.t2 TTS g2963.t2 21606529 21606529

Sequences

>g2963.t2 Gene=g2963 Length=798
ATGCTTTCTAGGAAAAAGGACAAATCCTCCAAAACTGGTTTAGCAGGAAAATACATAAAA
AAAAATACAAAATCTAAAACTCGACAGAGCGAAGAAAAATCAAAATTAAGTATCAACAAT
GGTTCAACGAGCAGTAGTAGTAATATTGGTCAAGGAAAATTTTTACAAAACTCATCGCTT
GCCTTAAACATGCTCGCGAGTCAAAAATATCATATGCAGCCAAGTAGTAGTTCATCAATA
AATTCTGAACCATCTTATTTTCATCGAACTCTTGCACATCATCATCATCCAATCAGCAAT
AATAACAGTGCACTCGCGAGTGATAGTCAAAATAATTATGTAGAAATAGATACTCTAGAA
ACGTTTTTATCTGAACAACAGAATGAGCAGCAACAGCAATATTCAAATGCTCCGTATGAA
ATCAATAATTACAAAGACAATAATCAACAAGTTTCAATCGACATGGCATTATCCTCTCCA
ATTTATGAAAATCAAGCAGTAGTTCGACGATCTGAATCGCCTATTTATACAAATACAAAT
CATCAAAACTCATTATATTCGACATCACAAAACTTGTACTCAAATCTACCACCGAGCAAT
TCAAATACATCAGCTTATGCAAATTTGCCTTCCAGTATCAGTTTAAATTTAGTTCCAGCA
ATTCGTAGCACGCCACAATTTAATGTGAACGTTGAAGAATTGCCATTACCTCCGGGCTGG
TCAGTCGATTATACATTAAAAGGAAGAAGAAAATATTATATTGACCACAATACTGCAACT
ACACATTGGTCTCATCCA

>g2963.t2 Gene=g2963 Length=266
MLSRKKDKSSKTGLAGKYIKKNTKSKTRQSEEKSKLSINNGSTSSSSNIGQGKFLQNSSL
ALNMLASQKYHMQPSSSSSINSEPSYFHRTLAHHHHPISNNNSALASDSQNNYVEIDTLE
TFLSEQQNEQQQQYSNAPYEINNYKDNNQQVSIDMALSSPIYENQAVVRRSESPIYTNTN
HQNSLYSTSQNLYSNLPPSNSNTSAYANLPSSISLNLVPAIRSTPQFNVNVEELPLPPGW
SVDYTLKGRRKYYIDHNTATTHWSHP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2963.t2 CDD cd00201 WW 237 266 3.59799E-7
6 g2963.t2 Gene3D G3DSA:2.20.70.10 - 229 266 1.4E-12
5 g2963.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 51 -
4 g2963.t2 MobiDBLite mobidb-lite consensus disorder prediction 34 51 -
2 g2963.t2 PANTHER PTHR47522 SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1 1 266 1.9E-21
1 g2963.t2 Pfam PF00397 WW domain 236 266 6.1E-7
7 g2963.t2 ProSiteProfiles PS50020 WW/rsp5/WWP domain profile. 234 266 15.742
3 g2963.t2 SUPERFAMILY SSF51045 WW domain 230 266 2.22E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0060090 molecular adaptor activity MF
GO:0035329 hippo signaling BP
GO:0005515 protein binding MF
GO:0042127 regulation of cell population proliferation BP
GO:0006915 apoptotic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values