General information for g2976.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Flotillin-2.
Parent gene
- The parent gene g2976 is located on chr_3: 21687309..21687836 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2976 | g2976.t13 | TTS | g2976.t13 | 21677841 | 21677841 |
| chr_3 | g2976 | g2976.t13 | isoform | g2976.t13 | 21678355 | 21680407 |
| chr_3 | g2976 | g2976.t13 | exon | g2976.t13.exon1 | 21678355 | 21679044 |
| chr_3 | g2976 | g2976.t13 | cds | g2976.t13.CDS1 | 21678859 | 21679044 |
| chr_3 | g2976 | g2976.t13 | exon | g2976.t13.exon2 | 21679101 | 21679202 |
| chr_3 | g2976 | g2976.t13 | cds | g2976.t13.CDS2 | 21679101 | 21679202 |
| chr_3 | g2976 | g2976.t13 | exon | g2976.t13.exon3 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t13 | cds | g2976.t13.CDS3 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t13 | exon | g2976.t13.exon4 | 21679640 | 21679934 |
| chr_3 | g2976 | g2976.t13 | cds | g2976.t13.CDS4 | 21679640 | 21679906 |
| chr_3 | g2976 | g2976.t13 | exon | g2976.t13.exon5 | 21680355 | 21680407 |
| chr_3 | g2976 | g2976.t13 | TSS | g2976.t13 | NA | NA |
Sequences
>g2976.t13 Gene=g2976 Length=1437
GGTCGAAGAGGTATACAAAGACCGCGACCAATTTGCTGCCCTAGTACGTGAGGTTTAATC
CAATCAACAGATGTCGGTCGAATGGGCATAGAGATCCTTTCGTTCACGATTAAAGATGTT
TATGATGATGTACAATATTTGCAATCGCTTGGTAAGGCTCAAACGGCTAGTGTTAAACGT
GACGCCGATTCGGGTGTAGCAGAGGCAAATCGAGATGCTGGAATACGTGAAGCTGAATGT
GAAAAAGCAGCTATGGATGTAAAATATTCAACTGACACCAAGATAGAGGACAATACAAGA
ATGTATAAACTTCAAAAGGCCAATTTCGATCAAGAGATCAACACAGCGAAAGCCGAATCT
GCACTTGCCTACGAACTGCAAGCTGCCAAAATCCGCCAAAAAATCCGTAATGAGGAAATT
CAAATTGATGTTGTCGAACGAAAGAAGCAAATTGAAGTCGAATCTCAAGAGATTTTAAGA
AAAGATTGCGAATTGACAGCAACAGTGAAACTGCCAGCAGAGGCTGAAAGTTATAGAGTG
CAGGCTATTGCTGAGGGTAAACGAACACAAACATTGGAAGTAGCTCGTGCTGAGGCAGAA
AGAATAAAGAAACTTGGTGCTGCTGAAGCTTTAGCTATTGAATTGGTTGGTAAAGCTGAA
GCAGAAAGAATGAGAATGAAGGCAAGCGTTTACAAACAATATGGAGATGCTGCCATCATG
AACATTGTTTTGGAATCATTGCCTAAGATTGCCGCAGAAGCAGCTGCACCACTCGCCAAG
ACCGAAGAGATTGTTCTCATCGGCGGAAATGACAGTACAACGGGTGATATTGCTCGTCTT
GTAGGTCAACTGCCACCTGCAGTGAATGCCTTGACCGGTGTCGACCTTACGAAAGTTTTG
GGCAAGATACCGGGTGCTAAAGTCCAAAATTAATGTGTGTCAGTCCATCATGAAGGAGCG
TTTGATTCACTTTAAGAAGATTACATTTTTGTTTAAACCTTAAAAAAATTTTTTGATTCT
GTTATCGATTTGTACCTTCTTTATTACCCAAATTTTGATTTATTTGTCAAATTTATTATA
ATTAGAAAAATGTTTTACTCATCTATATATATACACATAAATTACACACATTGCAACCCA
CTCACATACTTAAAAGTGCACATTCACGTACACGCAAAAATTTATATTTTATGTTTACCA
AGGATATTTTATAATTACTTTTCCAACATTACCGCCAAGTGGAATATATAAAGAGTGAAG
CATTTATATTACATTCAGTGTTCACGTTTTACGTTTCAAAATTATGAAAAGTTCTTCACA
AATACAAAAGAAAAATTGTTAGAAAAAAAGGGTATATGAAAATTGAAAATATTAACTGCA
AATAAATTAAAGAGACACAAAGGAGAAAAATATTGTACATCAAATTTAATACAATAA
>g2976.t13 Gene=g2976 Length=283
MGIEILSFTIKDVYDDVQYLQSLGKAQTASVKRDADSGVAEANRDAGIREAECEKAAMDV
KYSTDTKIEDNTRMYKLQKANFDQEINTAKAESALAYELQAAKIRQKIRNEEIQIDVVER
KKQIEVESQEILRKDCELTATVKLPAEAESYRVQAIAEGKRTQTLEVARAEAERIKKLGA
AEALAIELVGKAEAERMRMKASVYKQYGDAAIMNIVLESLPKIAAEAAAPLAKTEEIVLI
GGNDSTTGDIARLVGQLPPAVNALTGVDLTKVLGKIPGAKVQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2976.t13 | Coils | Coil | Coil | 101 | 121 | - |
| 1 | g2976.t13 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 1 | 280 | 2.6E-131 |
| 2 | g2976.t13 | PANTHER | PTHR13806:SF44 | FLOTILLIN-2 | 1 | 280 | 2.6E-131 |
| 3 | g2976.t13 | SUPERFAMILY | SSF117892 | Band 7/SPFH domain | 1 | 34 | 8.5E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
