General information for g2976.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Flotillin-2.
Parent gene
- The parent gene g2976 is located on chr_3: 21687309..21687836 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2976 | g2976.t16 | TTS | g2976.t16 | 21677841 | 21677841 |
| chr_3 | g2976 | g2976.t16 | isoform | g2976.t16 | 21678355 | 21683436 |
| chr_3 | g2976 | g2976.t16 | exon | g2976.t16.exon1 | 21678355 | 21679044 |
| chr_3 | g2976 | g2976.t16 | cds | g2976.t16.CDS1 | 21678859 | 21679044 |
| chr_3 | g2976 | g2976.t16 | exon | g2976.t16.exon2 | 21679101 | 21679202 |
| chr_3 | g2976 | g2976.t16 | cds | g2976.t16.CDS2 | 21679101 | 21679202 |
| chr_3 | g2976 | g2976.t16 | exon | g2976.t16.exon3 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t16 | cds | g2976.t16.CDS3 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t16 | exon | g2976.t16.exon4 | 21679640 | 21679933 |
| chr_3 | g2976 | g2976.t16 | cds | g2976.t16.CDS4 | 21679640 | 21679906 |
| chr_3 | g2976 | g2976.t16 | exon | g2976.t16.exon5 | 21680355 | 21680417 |
| chr_3 | g2976 | g2976.t16 | exon | g2976.t16.exon6 | 21683084 | 21683436 |
| chr_3 | g2976 | g2976.t16 | TSS | g2976.t16 | 21683448 | 21683448 |
Sequences
>g2976.t16 Gene=g2976 Length=1799
ACCGCAACATAAAGCAGTCGTGTTTCACAGCTAATAAGCAAAGAAAAATAATAACAATTT
TTTTGAAATTTAAACTTTATTTGAGAGCATACAAAGAGAGAAAAAAATTACCAGTTCTAG
TTTTTGAAAAAAAAAAAAGTTTTTCAATTAGAAAGTTTGCTTTCGTAACAGTAAAGTGAT
CGTGAAAATTACAAGCCCTTTTTGTAATTAATTCAAGTTACACAACAATCAACTGAATAG
AGTTAGTTTTGAAAGTGGAAAGCAATTTAAAATAGTTAAAAAATGTCGATGATTTGGATG
GGAACATTAAAGCTTTCGCTCATACTCACTATGACCACAATCGTGATTAAGAAGAACTCT
TACGGTCGAAGAGGTATACAAAGACCGCGACCAATTTGCTGCCCTAGTACGTGAGGTTAA
TCCAATCAACAGATGTCGGTCGAATGGGCATAGAGATCCTTTCGTTCACGATTAAAGATG
TTTATGATGATGTACAATATTTGCAATCGCTTGGTAAGGCTCAAACGGCTAGTGTTAAAC
GTGACGCCGATTCGGGTGTAGCAGAGGCAAATCGAGATGCTGGAATACGTGAAGCTGAAT
GTGAAAAAGCAGCTATGGATGTAAAATATTCAACTGACACCAAGATAGAGGACAATACAA
GAATGTATAAACTTCAAAAGGCCAATTTCGATCAAGAGATCAACACAGCGAAAGCCGAAT
CTGCACTTGCCTACGAACTGCAAGCTGCCAAAATCCGCCAAAAAATCCGTAATGAGGAAA
TTCAAATTGATGTTGTCGAACGAAAGAAGCAAATTGAAGTCGAATCTCAAGAGATTTTAA
GAAAAGATTGCGAATTGACAGCAACAGTGAAACTGCCAGCAGAGGCTGAAAGTTATAGAG
TGCAGGCTATTGCTGAGGGTAAACGAACACAAACATTGGAAGTAGCTCGTGCTGAGGCAG
AAAGAATAAAGAAACTTGGTGCTGCTGAAGCTTTAGCTATTGAATTGGTTGGTAAAGCTG
AAGCAGAAAGAATGAGAATGAAGGCAAGCGTTTACAAACAATATGGAGATGCTGCCATCA
TGAACATTGTTTTGGAATCATTGCCTAAGATTGCCGCAGAAGCAGCTGCACCACTCGCCA
AGACCGAAGAGATTGTTCTCATCGGCGGAAATGACAGTACAACGGGTGATATTGCTCGTC
TTGTAGGTCAACTGCCACCTGCAGTGAATGCCTTGACCGGTGTCGACCTTACGAAAGTTT
TGGGCAAGATACCGGGTGCTAAAGTCCAAAATTAATGTGTGTCAGTCCATCATGAAGGAG
CGTTTGATTCACTTTAAGAAGATTACATTTTTGTTTAAACCTTAAAAAAATTTTTTGATT
CTGTTATCGATTTGTACCTTCTTTATTACCCAAATTTTGATTTATTTGTCAAATTTATTA
TAATTAGAAAAATGTTTTACTCATCTATATATATACACATAAATTACACACATTGCAACC
CACTCACATACTTAAAAGTGCACATTCACGTACACGCAAAAATTTATATTTTATGTTTAC
CAAGGATATTTTATAATTACTTTTCCAACATTACCGCCAAGTGGAATATATAAAGAGTGA
AGCATTTATATTACATTCAGTGTTCACGTTTTACGTTTCAAAATTATGAAAAGTTCTTCA
CAAATACAAAAGAAAAATTGTTAGAAAAAAAGGGTATATGAAAATTGAAAATATTAACTG
CAAATAAATTAAAGAGACACAAAGGAGAAAAATATTGTACATCAAATTTAATACAATAA
>g2976.t16 Gene=g2976 Length=283
MGIEILSFTIKDVYDDVQYLQSLGKAQTASVKRDADSGVAEANRDAGIREAECEKAAMDV
KYSTDTKIEDNTRMYKLQKANFDQEINTAKAESALAYELQAAKIRQKIRNEEIQIDVVER
KKQIEVESQEILRKDCELTATVKLPAEAESYRVQAIAEGKRTQTLEVARAEAERIKKLGA
AEALAIELVGKAEAERMRMKASVYKQYGDAAIMNIVLESLPKIAAEAAAPLAKTEEIVLI
GGNDSTTGDIARLVGQLPPAVNALTGVDLTKVLGKIPGAKVQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2976.t16 | Coils | Coil | Coil | 101 | 121 | - |
| 1 | g2976.t16 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 1 | 280 | 2.6E-131 |
| 2 | g2976.t16 | PANTHER | PTHR13806:SF44 | FLOTILLIN-2 | 1 | 280 | 2.6E-131 |
| 3 | g2976.t16 | SUPERFAMILY | SSF117892 | Band 7/SPFH domain | 1 | 34 | 8.5E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
