General information for g2976.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Flotillin-2.
Parent gene
- The parent gene g2976 is located on chr_3: 21687309..21687836 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2976 | g2976.t17 | TTS | g2976.t17 | 21677841 | 21677841 |
| chr_3 | g2976 | g2976.t17 | isoform | g2976.t17 | 21678859 | 21683104 |
| chr_3 | g2976 | g2976.t17 | exon | g2976.t17.exon1 | 21678859 | 21679044 |
| chr_3 | g2976 | g2976.t17 | cds | g2976.t17.CDS1 | 21678859 | 21679044 |
| chr_3 | g2976 | g2976.t17 | exon | g2976.t17.exon2 | 21679101 | 21679202 |
| chr_3 | g2976 | g2976.t17 | cds | g2976.t17.CDS2 | 21679101 | 21679202 |
| chr_3 | g2976 | g2976.t17 | exon | g2976.t17.exon3 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t17 | cds | g2976.t17.CDS3 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t17 | exon | g2976.t17.exon4 | 21679664 | 21679917 |
| chr_3 | g2976 | g2976.t17 | cds | g2976.t17.CDS4 | 21679664 | 21679906 |
| chr_3 | g2976 | g2976.t17 | exon | g2976.t17.exon5 | 21680355 | 21680417 |
| chr_3 | g2976 | g2976.t17 | exon | g2976.t17.exon6 | 21683084 | 21683104 |
| chr_3 | g2976 | g2976.t17 | TSS | g2976.t17 | 21683448 | 21683448 |
Sequences
>g2976.t17 Gene=g2976 Length=923
GACCACAATCGTGATTAAGAAGAACTCTTACGGTCGAAGAGGTATACAAAGACCGCGACC
AATTTGCTGCCCTAGTACGTGAGGATGTCGGTCGAATGGGCATAGAGATCCTTTCGTTCA
CGATTAAAGATGTTTATGATGATGTACAATATTTGCAATCGCTTGGTAAGGCTCAAACGG
CTAGTGTTAAACGTGACGCCGATTCGGGTGTAGCAGAGGCAAATCGAGATGCTGGAATAC
GTGAAGCTGAATGTGAAAAAGCAGCTATGGATGTAAAATATTCAACTGACACCAAGATAG
AGGACAATACAAGAATGTATAAACTTCAAAAGGCCAATAAAGCCGAATCTGCACTTGCCT
ACGAACTGCAAGCTGCCAAAATCCGCCAAAAAATCCGTAATGAGGAAATTCAAATTGATG
TTGTCGAACGAAAGAAGCAAATTGAAGTCGAATCTCAAGAGATTTTAAGAAAAGATTGCG
AATTGACAGCAACAGTGAAACTGCCAGCAGAGGCTGAAAGTTATAGAGTGCAGGCTATTG
CTGAGGGTAAACGAACACAAACATTGGAAGTAGCTCGTGCTGAGGCAGAAAGAATAAAGA
AACTTGGTGCTGCTGAAGCTTTAGCTATTGAATTGGTTGGTAAAGCTGAAGCAGAAAGAA
TGAGAATGAAGGCAAGCGTTTACAAACAATATGGAGATGCTGCCATCATGAACATTGTTT
TGGAATCATTGCCTAAGATTGCCGCAGAAGCAGCTGCACCACTCGCCAAGACCGAAGAGA
TTGTTCTCATCGGCGGAAATGACAGTACAACGGGTGATATTGCTCGTCTTGTAGGTCAAC
TGCCACCTGCAGTGAATGCCTTGACCGGTGTCGACCTTACGAAAGTTTTGGGCAAGATAC
CGGGTGCTAAAGTCCAAAATTAA
>g2976.t17 Gene=g2976 Length=275
MGIEILSFTIKDVYDDVQYLQSLGKAQTASVKRDADSGVAEANRDAGIREAECEKAAMDV
KYSTDTKIEDNTRMYKLQKANKAESALAYELQAAKIRQKIRNEEIQIDVVERKKQIEVES
QEILRKDCELTATVKLPAEAESYRVQAIAEGKRTQTLEVARAEAERIKKLGAAEALAIEL
VGKAEAERMRMKASVYKQYGDAAIMNIVLESLPKIAAEAAAPLAKTEEIVLIGGNDSTTG
DIARLVGQLPPAVNALTGVDLTKVLGKIPGAKVQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2976.t17 | Coils | Coil | Coil | 93 | 113 | - |
| 1 | g2976.t17 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 1 | 272 | 5.2E-123 |
| 2 | g2976.t17 | PANTHER | PTHR13806:SF44 | FLOTILLIN-2 | 1 | 272 | 5.2E-123 |
| 3 | g2976.t17 | SUPERFAMILY | SSF117892 | Band 7/SPFH domain | 1 | 34 | 8.11E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
