General information for g2976.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Flotillin-2.
Parent gene
- The parent gene g2976 is located on chr_3: 21687309..21687836 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2976 | g2976.t20 | isoform | g2976.t20 | 21679187 | 21683436 |
| chr_3 | g2976 | g2976.t20 | exon | g2976.t20.exon1 | 21679187 | 21679202 |
| chr_3 | g2976 | g2976.t20 | cds | g2976.t20.CDS1 | 21679188 | 21679202 |
| chr_3 | g2976 | g2976.t20 | exon | g2976.t20.exon2 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t20 | cds | g2976.t20.CDS2 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t20 | exon | g2976.t20.exon3 | 21679640 | 21679917 |
| chr_3 | g2976 | g2976.t20 | cds | g2976.t20.CDS3 | 21679640 | 21679906 |
| chr_3 | g2976 | g2976.t20 | exon | g2976.t20.exon4 | 21680355 | 21680417 |
| chr_3 | g2976 | g2976.t20 | exon | g2976.t20.exon5 | 21683084 | 21683436 |
| chr_3 | g2976 | g2976.t20 | TSS | g2976.t20 | 21683448 | 21683448 |
| chr_3 | g2976 | g2976.t20 | TTS | g2976.t20 | NA | NA |
Sequences
>g2976.t20 Gene=g2976 Length=1007
ACCGCAACATAAAGCAGTCGTGTTTCACAGCTAATAAGCAAAGAAAAATAATAACAATTT
TTTTGAAATTTAAACTTTATTTGAGAGCATACAAAGAGAGAAAAAAATTACCAGTTCTAG
TTTTTGAAAAAAAAAAAAGTTTTTCAATTAGAAAGTTTGCTTTCGTAACAGTAAAGTGAT
CGTGAAAATTACAAGCCCTTTTTGTAATTAATTCAAGTTACACAACAATCAACTGAATAG
AGTTAGTTTTGAAAGTGGAAAGCAATTTAAAATAGTTAAAAAATGTCGATGATTTGGATG
GGAACATTAAAGCTTTCGCTCATACTCACTATGACCACAATCGTGATTAAGAAGAACTCT
TACGGTCGAAGAGGTATACAAAGACCGCGACCAATTTGCTGCCCTAGTACGTGAGGATGT
CGGTCGAATGGGCATAGAGATCCTTTCGTTCACGATTAAAGATGTTTATGATGATGTACA
ATATTTGCAATCGCTTGGTAAGGCTCAAACGGCTAGTGTTAAACGTGACGCCGATTCGGG
TGTAGCAGAGGCAAATCGAGATGCTGGAATACGTGAAGCTGAATGTGAAAAAGCAGCTAT
GGATGTAAAATATTCAACTGACACCAAGATAGAGGACAATACAAGAATGTATAAACTTCA
AAAGGCCAATTTCGATCAAGAGATCAACACAGCGAAAGCCGAATCTGCACTTGCCTACGA
ACTGCAAGCTGCCAAAATCCGCCAAAAAATCCGTAATGAGGAAATTCAAATTGATGTTGT
CGAACGAAAGAAGCAAATTGAAGTCGAATCTCAAGAGATTTTAAGAAAAGATTGCGAATT
GACAGCAACAGTGAAACTGCCAGCAGAGGCTGAAAGTTATAGAGTGCAGGCTATTGCTGA
GGGTAAACGAACACAAACATTGGAAGTAGCTCGTGCTGAGGCAGAAAGAATAAAGAAACT
TGGTGCTGCTGAAGCTTTAGCTATTGAATTGGTTGGTAAAGCTGAAG
>g2976.t20 Gene=g2976 Length=193
MGIEILSFTIKDVYDDVQYLQSLGKAQTASVKRDADSGVAEANRDAGIREAECEKAAMDV
KYSTDTKIEDNTRMYKLQKANFDQEINTAKAESALAYELQAAKIRQKIRNEEIQIDVVER
KKQIEVESQEILRKDCELTATVKLPAEAESYRVQAIAEGKRTQTLEVARAEAERIKKLGA
AEALAIELVGKAE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2976.t20 | Coils | Coil | Coil | 101 | 121 | - |
| 1 | g2976.t20 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 1 | 193 | 3.8E-88 |
| 2 | g2976.t20 | PANTHER | PTHR13806:SF44 | FLOTILLIN-2 | 1 | 193 | 3.8E-88 |
| 3 | g2976.t20 | SUPERFAMILY | SSF117892 | Band 7/SPFH domain | 1 | 34 | 4.84E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
