General information for g2976.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Flotillin-2.
Parent gene
- The parent gene g2976 is located on chr_3: 21687309..21687836 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2976 | g2976.t4 | isoform | g2976.t4 | 21677826 | 21679917 |
| chr_3 | g2976 | g2976.t4 | exon | g2976.t4.exon1 | 21677826 | 21679044 |
| chr_3 | g2976 | g2976.t4 | TTS | g2976.t4 | 21677841 | 21677841 |
| chr_3 | g2976 | g2976.t4 | cds | g2976.t4.CDS1 | 21678859 | 21679044 |
| chr_3 | g2976 | g2976.t4 | exon | g2976.t4.exon2 | 21679101 | 21679202 |
| chr_3 | g2976 | g2976.t4 | cds | g2976.t4.CDS2 | 21679101 | 21679202 |
| chr_3 | g2976 | g2976.t4 | exon | g2976.t4.exon3 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t4 | cds | g2976.t4.CDS3 | 21679285 | 21679581 |
| chr_3 | g2976 | g2976.t4 | exon | g2976.t4.exon4 | 21679640 | 21679917 |
| chr_3 | g2976 | g2976.t4 | cds | g2976.t4.CDS4 | 21679640 | 21679906 |
| chr_3 | g2976 | g2976.t4 | TSS | g2976.t4 | NA | NA |
Sequences
>g2976.t4 Gene=g2976 Length=1896
ATGTCGGTCGAATGGGCATAGAGATCCTTTCGTTCACGATTAAAGATGTTTATGATGATG
TACAATATTTGCAATCGCTTGGTAAGGCTCAAACGGCTAGTGTTAAACGTGACGCCGATT
CGGGTGTAGCAGAGGCAAATCGAGATGCTGGAATACGTGAAGCTGAATGTGAAAAAGCAG
CTATGGATGTAAAATATTCAACTGACACCAAGATAGAGGACAATACAAGAATGTATAAAC
TTCAAAAGGCCAATTTCGATCAAGAGATCAACACAGCGAAAGCCGAATCTGCACTTGCCT
ACGAACTGCAAGCTGCCAAAATCCGCCAAAAAATCCGTAATGAGGAAATTCAAATTGATG
TTGTCGAACGAAAGAAGCAAATTGAAGTCGAATCTCAAGAGATTTTAAGAAAAGATTGCG
AATTGACAGCAACAGTGAAACTGCCAGCAGAGGCTGAAAGTTATAGAGTGCAGGCTATTG
CTGAGGGTAAACGAACACAAACATTGGAAGTAGCTCGTGCTGAGGCAGAAAGAATAAAGA
AACTTGGTGCTGCTGAAGCTTTAGCTATTGAATTGGTTGGTAAAGCTGAAGCAGAAAGAA
TGAGAATGAAGGCAAGCGTTTACAAACAATATGGAGATGCTGCCATCATGAACATTGTTT
TGGAATCATTGCCTAAGATTGCCGCAGAAGCAGCTGCACCACTCGCCAAGACCGAAGAGA
TTGTTCTCATCGGCGGAAATGACAGTACAACGGGTGATATTGCTCGTCTTGTAGGTCAAC
TGCCACCTGCAGTGAATGCCTTGACCGGTGTCGACCTTACGAAAGTTTTGGGCAAGATAC
CGGGTGCTAAAGTCCAAAATTAATGTGTGTCAGTCCATCATGAAGGAGCGTTTGATTCAC
TTTAAGAAGATTACATTTTTGTTTAAACCTTAAAAAAATTTTTTGATTCTGTTATCGATT
TGTACCTTCTTTATTACCCAAATTTTGATTTATTTGTCAAATTTATTATAATTAGAAAAA
TGTTTTACTCATCTATATATATACACATAAATTACACACATTGCAACCCACTCACATACT
TAAAAGTGCACATTCACGTACACGCAAAAATTTATATTTTATGTTTACCAAGGATATTTT
ATAATTACTTTTCCAACATTACCGCCAAGTGGAATATATAAAGAGTGAAGCATTTATATT
ACATTCAGTGTTCACGTTTTACGTTTCAAAATTATGAAAAGTTCTTCACAAATACAAAAG
AAAAATTGTTAGAAAAAAAGGGTATATGAAAATTGAAAATATTAACTGCAAATAAATTAA
AGAGACACAAAGGAGAAAAATATTGTACATCAAATTTAATACAATAATATAATAATTTTA
AACTTATTACCTATTTTTCAATTGTATTTCATACTGCCATAATTGTATGAAAAAGTATTT
TAATTTTGTTAAAAACTAACAAAGATAGATAATTAGAATTTAACAGTAACGAGTAAAAAG
GATTTTTTTCATTTTTAGTTTTCAAACAATCATACTTTTTATAAAAATAGAAAATAATTC
ACCAAAAAAATGTTGGAAATGTTTAACCTTTTTGAAAAGATTTTAAATGGAAAAGAAAAG
TTTGGCAGCTACTGAATAAACAAGTGTGCAAATTCTTAAAATTTTTAATGAAAAACTTTT
CAAAAAATTCAAACATTTCTAACGCTCGAGAAAGTAATAAAAGACGAATTTTATATGTAT
GCCGAAATGAAAAATAATCTTTTAGAAAAATTACCGAAACGAACGATTTATTAGTAAGGA
ATTTTGTTCAAACAATAACATTTTGAAATAGAGAAGCGCATTCTTAAAAGAAGAATGGAA
TAAATAAAAATCGATGAAATGAAATTTTTATTTTTA
>g2976.t4 Gene=g2976 Length=283
MGIEILSFTIKDVYDDVQYLQSLGKAQTASVKRDADSGVAEANRDAGIREAECEKAAMDV
KYSTDTKIEDNTRMYKLQKANFDQEINTAKAESALAYELQAAKIRQKIRNEEIQIDVVER
KKQIEVESQEILRKDCELTATVKLPAEAESYRVQAIAEGKRTQTLEVARAEAERIKKLGA
AEALAIELVGKAEAERMRMKASVYKQYGDAAIMNIVLESLPKIAAEAAAPLAKTEEIVLI
GGNDSTTGDIARLVGQLPPAVNALTGVDLTKVLGKIPGAKVQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2976.t4 | Coils | Coil | Coil | 101 | 121 | - |
| 1 | g2976.t4 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 1 | 280 | 2.6E-131 |
| 2 | g2976.t4 | PANTHER | PTHR13806:SF44 | FLOTILLIN-2 | 1 | 280 | 2.6E-131 |
| 3 | g2976.t4 | SUPERFAMILY | SSF117892 | Band 7/SPFH domain | 1 | 34 | 8.5E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
