General information for g2976.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Flotillin-2.
Parent gene
- The parent gene g2976 is located on chr_3: 21687309..21687836 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2976 | g2976.t9 | TTS | g2976.t9 | 21677841 | 21677841 |
| chr_3 | g2976 | g2976.t9 | isoform | g2976.t9 | 21677927 | 21679557 |
| chr_3 | g2976 | g2976.t9 | exon | g2976.t9.exon1 | 21677927 | 21679044 |
| chr_3 | g2976 | g2976.t9 | cds | g2976.t9.CDS1 | 21678859 | 21679044 |
| chr_3 | g2976 | g2976.t9 | exon | g2976.t9.exon2 | 21679101 | 21679202 |
| chr_3 | g2976 | g2976.t9 | cds | g2976.t9.CDS2 | 21679101 | 21679178 |
| chr_3 | g2976 | g2976.t9 | exon | g2976.t9.exon3 | 21679285 | 21679557 |
| chr_3 | g2976 | g2976.t9 | TSS | g2976.t9 | NA | NA |
Sequences
>g2976.t9 Gene=g2976 Length=1493
GAACTGCAAGCTGCCAAAATCCGCCAAAAAATCCGTAATGAGGAAATTCAAATTGATGTT
GTCGAACGAAAGAAGCAAATTGAAGTCGAATCTCAAGAGATTTTAAGAAAAGATTGCGAA
TTGACAGCAACAGTGAAACTGCCAGCAGAGGCTGAAAGTTATAGAGTGCAGGCTATTGCT
GAGGGTAAACGAACACAAACATTGGAAGTAGCTCGTGCTGAGGCAGAAAGAATAAAGAAA
CTTGGTGCTGCTGAAGCTTTAGCTATTGAATTGGTTGGTAAAGCTGAAGCAGAAAGAATG
AGAATGAAGGCAAGCGTTTACAAACAATATGGAGATGCTGCCATCATGAACATTGTTTTG
GAATCATTGCCTAAGATTGCCGCAGAAGCAGCTGCACCACTCGCCAAGACCGAAGAGATT
GTTCTCATCGGCGGAAATGACAGTACAACGGGTGATATTGCTCGTCTTGTAGGTCAACTG
CCACCTGCAGTGAATGCCTTGACCGGTGTCGACCTTACGAAAGTTTTGGGCAAGATACCG
GGTGCTAAAGTCCAAAATTAATGTGTGTCAGTCCATCATGAAGGAGCGTTTGATTCACTT
TAAGAAGATTACATTTTTGTTTAAACCTTAAAAAAATTTTTTGATTCTGTTATCGATTTG
TACCTTCTTTATTACCCAAATTTTGATTTATTTGTCAAATTTATTATAATTAGAAAAATG
TTTTACTCATCTATATATATACACATAAATTACACACATTGCAACCCACTCACATACTTA
AAAGTGCACATTCACGTACACGCAAAAATTTATATTTTATGTTTACCAAGGATATTTTAT
AATTACTTTTCCAACATTACCGCCAAGTGGAATATATAAAGAGTGAAGCATTTATATTAC
ATTCAGTGTTCACGTTTTACGTTTCAAAATTATGAAAAGTTCTTCACAAATACAAAAGAA
AAATTGTTAGAAAAAAAGGGTATATGAAAATTGAAAATATTAACTGCAAATAAATTAAAG
AGACACAAAGGAGAAAAATATTGTACATCAAATTTAATACAATAATATAATAATTTTAAA
CTTATTACCTATTTTTCAATTGTATTTCATACTGCCATAATTGTATGAAAAAGTATTTTA
ATTTTGTTAAAAACTAACAAAGATAGATAATTAGAATTTAACAGTAACGAGTAAAAAGGA
TTTTTTTCATTTTTAGTTTTCAAACAATCATACTTTTTATAAAAATAGAAAATAATTCAC
CAAAAAAATGTTGGAAATGTTTAACCTTTTTGAAAAGATTTTAAATGGAAAAGAAAAGTT
TGGCAGCTACTGAATAAACAAGTGTGCAAATTCTTAAAATTTTTAATGAAAAACTTTTCA
AAAAATTCAAACATTTCTAACGCTCGAGAAAGTAATAAAAGACGAATTTTATATGTATGC
CGAAATGAAAAATAATCTTTTAGAAAAATTACCGAAACGAACGATTTATTAGT
>g2976.t9 Gene=g2976 Length=87
MRMKASVYKQYGDAAIMNIVLESLPKIAAEAAAPLAKTEEIVLIGGNDSTTGDIARLVGQ
LPPAVNALTGVDLTKVLGKIPGAKVQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g2976.t9 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 1 | 84 | 0 |
| g2976.t9 | PANTHER | PTHR13806:SF44 | FLOTILLIN-2 | 1 | 84 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
