General information for g2982.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glucose dehydrogenase.
Parent gene
- The parent gene g2982 is located on chr_3: 21719737..21722265 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2982 | g2982.t1 | isoform | g2982.t1 | 21719737 | 21722265 |
| chr_3 | g2982 | g2982.t1 | exon | g2982.t1.exon1 | 21719737 | 21719908 |
| chr_3 | g2982 | g2982.t1 | cds | g2982.t1.CDS1 | 21719737 | 21719908 |
| chr_3 | g2982 | g2982.t1 | exon | g2982.t1.exon2 | 21719987 | 21720207 |
| chr_3 | g2982 | g2982.t1 | cds | g2982.t1.CDS2 | 21719987 | 21720207 |
| chr_3 | g2982 | g2982.t1 | exon | g2982.t1.exon3 | 21720266 | 21720901 |
| chr_3 | g2982 | g2982.t1 | cds | g2982.t1.CDS3 | 21720266 | 21720901 |
| chr_3 | g2982 | g2982.t1 | exon | g2982.t1.exon4 | 21720976 | 21721092 |
| chr_3 | g2982 | g2982.t1 | cds | g2982.t1.CDS4 | 21720976 | 21721092 |
| chr_3 | g2982 | g2982.t1 | exon | g2982.t1.exon5 | 21721458 | 21721495 |
| chr_3 | g2982 | g2982.t1 | cds | g2982.t1.CDS5 | 21721458 | 21721495 |
| chr_3 | g2982 | g2982.t1 | exon | g2982.t1.exon6 | 21721558 | 21721993 |
| chr_3 | g2982 | g2982.t1 | cds | g2982.t1.CDS6 | 21721558 | 21721993 |
| chr_3 | g2982 | g2982.t1 | exon | g2982.t1.exon7 | 21722059 | 21722265 |
| chr_3 | g2982 | g2982.t1 | cds | g2982.t1.CDS7 | 21722059 | 21722265 |
| chr_3 | g2982 | g2982.t1 | TSS | g2982.t1 | NA | NA |
| chr_3 | g2982 | g2982.t1 | TTS | g2982.t1 | NA | NA |
Sequences
>g2982.t1 Gene=g2982 Length=1827
ATGGTAGTACCTGGTCTCGGAGCGACTCTTGGTATTTTTGGTTCAGGAATATGGATTATT
CCATTACTATTAGGTACAATTTCTTATTATCGATACGATCGAGTTGATCCAGAGTCAAAG
CCAATAGACCAACAAAATTTACTTCCTGAATACGATTTCATAGTTATTGGTGGTGGATCT
GCCGGTGCGGTCGTTGCCAATCGTCTCACTGAAAATCCAAAGGTAAATGTTTTGCTTTTG
GAAGCAGGTCCAGATGAAAATGAAGTCACAGATGTTCCTTCACTAGCTGCTTATTTACAA
TTAAGTAATTTAGATTGGTCGTATAAAACTGAACCATCAAATACTGCATGTCTCGGTATG
GTAAATAATAGATGCAATTGGCCAAGAGGAAAGGTGCTTGGTGGATCAAGTGTTCTTAAT
TATATGATTTATGTTCGTGGAAATAAAAATGATTTTGATCATTGGGGTCAACTTGGAAAT
CCTGGATGGGATTATAAATCAGTTCTTCCATACTTCCTTAAATCAGAAGATAATCGCAAT
CCATACTTAGCTCGATCACCATACCATGCAAGAGGTGGTTATTTAACAGTACAAGAAGCA
CCTTGGCACACTCCACTCGTTGCTGCCTTCGTCGAAGCAGGTACAGAGATTGGATATGAA
AATCGAGACATAAATGGAGAGAAACAGACTGGCTATATGATTGCTCAAGGGACAATTCGC
AGAGGCAGTCGATGCTCAACAGCGAAAGCATTTTTAAGACCAATTCGCTTACGACCCAAT
TTCCACCTTGCACTTAATGCATTTGTTACGAAAATAGAAATAGACCCGAAAACAAAACGT
GCATGGGGCGTAGAATTTGTAAGGCACAATCGAAAACAAGTTATTAGAGCGAGACGTGAA
GTAATATTGTCAGCTGGTGCAATAAACAGCCCACAAATATTAATGTTATCAGGAGTTGGG
CCACGTGATCATCTTGAAGCTATGGGAATTCCGGTTATTAAAAATTTGCCAGTTGGAAAC
AACCTCATGGATCATCTTGGTTTTGGCGGTTTAACATTTGTTCTTGACAAACCGGTTTCT
ATTCTTCAGAATCGTCTTCAAGCAGCAGCCGCTACAACAGAATATGTTTTGAACGAAAGA
GGTAAGGGAGGACTTGAGGGTATCGCTTTTGTAAAAACACCATATGCTAACCAGAGTCTT
GATTGGCCTGATATTCAATTTCATATGGCGCCAGCATCAATTAATTCTGATAGTGGTGCA
CAAGTGTGGAAGATTTTAGGACTAAAACCTGAATTGTACAAAGAGATGTATGGACCAATT
CAAGATACATATACATGGACAATTATGCCACTGCTATTACGTCCACGATCTCGTGGTTGG
GTGCGGCTTCAATCAAAAAATCCATTTGTAGCACCAATTATGAATCCCAACTATTACGAT
GATCCACTTGATATGTTGACGATGATTGAAGGGGCTAAAATTGCTTTGCAAACAGCGAAT
GCAAAAGTATTCAAACAATTTGGTTCGCGATTATATCAGAAACCACTACCTAACTGCAAG
CATTTAAAATTTTTATCTGATGAGTATTTAGAATGTGGAATAAGAACCATCTCTATGACA
ATATATCATCAGAGTGGAACAACTAAAATGGGACCTGAATGGGATGACACAGCTGTTGTG
GATCCACGATTGAAAGTTTATGGTATACATGGTTTACGCGTAATTGATGCATCGATTATG
CCACAAGTCGTGAGTGGAAACACAAACGCTGCAGTGATTATGATCGGCGAAAAGGGAGCA
GACTTAATAAAAGAAGATTGGCGATAA
>g2982.t1 Gene=g2982 Length=608
MVVPGLGATLGIFGSGIWIIPLLLGTISYYRYDRVDPESKPIDQQNLLPEYDFIVIGGGS
AGAVVANRLTENPKVNVLLLEAGPDENEVTDVPSLAAYLQLSNLDWSYKTEPSNTACLGM
VNNRCNWPRGKVLGGSSVLNYMIYVRGNKNDFDHWGQLGNPGWDYKSVLPYFLKSEDNRN
PYLARSPYHARGGYLTVQEAPWHTPLVAAFVEAGTEIGYENRDINGEKQTGYMIAQGTIR
RGSRCSTAKAFLRPIRLRPNFHLALNAFVTKIEIDPKTKRAWGVEFVRHNRKQVIRARRE
VILSAGAINSPQILMLSGVGPRDHLEAMGIPVIKNLPVGNNLMDHLGFGGLTFVLDKPVS
ILQNRLQAAAATTEYVLNERGKGGLEGIAFVKTPYANQSLDWPDIQFHMAPASINSDSGA
QVWKILGLKPELYKEMYGPIQDTYTWTIMPLLLRPRSRGWVRLQSKNPFVAPIMNPNYYD
DPLDMLTMIEGAKIALQTANAKVFKQFGSRLYQKPLPNCKHLKFLSDEYLECGIRTISMT
IYHQSGTTKMGPEWDDTAVVDPRLKVYGIHGLRVIDASIMPQVVSGNTNAAVIMIGEKGA
DLIKEDWR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2982.t1 | Gene3D | G3DSA:3.50.50.60 | - | 51 | 604 | 5.2E-187 |
| 8 | g2982.t1 | Gene3D | G3DSA:3.30.560.10 | Glucose Oxidase | 90 | 542 | 5.2E-187 |
| 3 | g2982.t1 | PANTHER | PTHR11552:SF215 | FI02019P | 12 | 604 | 6.2E-270 |
| 4 | g2982.t1 | PANTHER | PTHR11552 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE | 12 | 604 | 6.2E-270 |
| 12 | g2982.t1 | PIRSF | PIRSF000137 | Alcohol_oxidase | 33 | 608 | 9.6E-159 |
| 1 | g2982.t1 | Pfam | PF00732 | GMC oxidoreductase | 51 | 346 | 1.6E-83 |
| 2 | g2982.t1 | Pfam | PF05199 | GMC oxidoreductase | 455 | 598 | 5.7E-38 |
| 10 | g2982.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 11 | g2982.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 30 | - |
| 9 | g2982.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 31 | 608 | - |
| 15 | g2982.t1 | ProSitePatterns | PS00623 | GMC oxidoreductases signature 1. | 130 | 153 | - |
| 14 | g2982.t1 | ProSitePatterns | PS00624 | GMC oxidoreductases signature 2. | 306 | 320 | - |
| 6 | g2982.t1 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 50 | 608 | 9.62E-88 |
| 5 | g2982.t1 | SUPERFAMILY | SSF54373 | FAD-linked reductases, C-terminal domain | 384 | 547 | 7.06E-44 |
| 13 | g2982.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
