General information for g2985.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable 3-ketoacyl-CoA thiolase.
Parent gene
- The parent gene g2985 is located on chr_3: 21742765..21743844 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2985 | g2985.t7 | TTS | g2985.t7 | 21741991 | 21741991 |
| chr_3 | g2985 | g2985.t7 | isoform | g2985.t7 | 21742034 | 21742591 |
| chr_3 | g2985 | g2985.t7 | exon | g2985.t7.exon1 | 21742034 | 21742591 |
| chr_3 | g2985 | g2985.t7 | cds | g2985.t7.CDS1 | 21742098 | 21742574 |
| chr_3 | g2985 | g2985.t7 | TSS | g2985.t7 | NA | NA |
Sequences
>g2985.t7 Gene=g2985 Length=558
CATCAGCATGCTTAATTATGACTGAAGAAAAAGCAAAAGCATTAGGATTAAAACCAAAAG
CATATCTTCGTGATTTCATTTATGTTTCACAAGATCCAATTGATCAACTTTTGCTTGGGC
CAGCATACGGAATTCCCAAATTGCTTAGCAAAACAGGACTTACACTTAAAGACATTGATG
TATGGGAAATTCATGAAGCTTTCGCTGGTCAAATTTTAGCTAACCTAAAAGCCTTAGATT
CTGATTATTTTTGCAAAGATTATTTGAAACTTGGTCAAAAATATGGTACACCTGACTTAA
GCAAATGGAATACATGGGGTGGATCGCTTTCAATTGGACATCCTTTTGCAGCTACTGGTG
TGAGATTATGTATGCATACATCAAATAGATTAGTTCGTGAAAATGGTCAATTGGGTGTTG
TTGCTGCTTGTGCAGCTGGTGGTCAAGGTGTTGCAATGTTGATCGAAAGACATCCTGATG
CTCATGCTAATTAAATTATTCATCACAATCATTTTTAGATACATGAAATTTTACTTCTAT
GACAAAGGCAGATATTTG
>g2985.t7 Gene=g2985 Length=158
MTEEKAKALGLKPKAYLRDFIYVSQDPIDQLLLGPAYGIPKLLSKTGLTLKDIDVWEIHE
AFAGQILANLKALDSDYFCKDYLKLGQKYGTPDLSKWNTWGGSLSIGHPFAATGVRLCMH
TSNRLVRENGQLGVVAACAAGGQGVAMLIERHPDAHAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2985.t7 | Gene3D | G3DSA:3.40.47.10 | - | 1 | 151 | 1.1E-44 |
| 2 | g2985.t7 | PANTHER | PTHR18919:SF147 | TRIFUNCTIONAL ENZYME SUBUNIT BETA, MITOCHONDRIAL | 1 | 151 | 2.3E-62 |
| 3 | g2985.t7 | PANTHER | PTHR18919 | ACETYL-COA C-ACYLTRANSFERASE | 1 | 151 | 2.3E-62 |
| 1 | g2985.t7 | Pfam | PF02803 | Thiolase, C-terminal domain | 11 | 151 | 1.5E-44 |
| 6 | g2985.t7 | ProSitePatterns | PS00737 | Thiolases signature 2. | 98 | 114 | - |
| 5 | g2985.t7 | ProSitePatterns | PS00099 | Thiolases active site. | 133 | 146 | - |
| 4 | g2985.t7 | SUPERFAMILY | SSF53901 | Thiolase-like | 12 | 151 | 2.47E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
