Gene loci information

Transcript annotation

  • This transcript has been annotated as Trifunctional enzyme subunit beta, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2985 g2985.t9 TTS g2985.t9 21741991 21741991
chr_3 g2985 g2985.t9 isoform g2985.t9 21742098 21743267
chr_3 g2985 g2985.t9 exon g2985.t9.exon1 21742098 21742597
chr_3 g2985 g2985.t9 cds g2985.t9.CDS1 21742098 21742597
chr_3 g2985 g2985.t9 exon g2985.t9.exon2 21742657 21743205
chr_3 g2985 g2985.t9 cds g2985.t9.CDS2 21742657 21743191
chr_3 g2985 g2985.t9 exon g2985.t9.exon3 21743261 21743267
chr_3 g2985 g2985.t9 TSS g2985.t9 21743936 21743936

Sequences

>g2985.t9 Gene=g2985 Length=1056
ACTCCAGCACATACTGTTACAATGGCATGTATAAGCAGCAATCAAGCAATCACAACTGCT
ATGGGTTTAATTGCTACTGGAACATATGAATCTATTGTTTGTGGTGGTGTAGAATTTATG
AGTGACGTACCTATTCGTCATAGTAGAAAAATGCGATCATTAATGTTAAAAGCCAACAAA
GCTAAAACACTTGGTCAACGTCTTTCGTTACTATCAACATTCCGACCAAGCTTTTTGATT
CCTGAACTCCCAGCTGTAGCTGAATTTAGCAGTGGTGAAACAATGGGACATTCTGCTGAT
CGTTTGGCATCAGCATTTTCTGTTTCTAGAAAAGAACAAGATGATTATGCACTTCGTTCT
CATACATTAGCTAAGCAGGCTCAAGAGAAAGGATATTTTACGGATTTAGTTCCATTCAAA
GTAGATGGTGTAGAAAAAACAATCAACGTGGACAATGGAATTCGTGTTTCCACACCCGAA
GCTTTAGCAAAATTGAAGCCTGCATTTGTTAAACCTTATGGCACGATTACTGCAGCAAAT
GCTTCATATTTGACTGATGGAGCATCAGCATGCTTAATTATGACTGAAGAAAAAGCAAAA
GCATTAGGATTAAAACCAAAAGCATATCTTCGTGATTTCATTTATGTTTCACAAGATCCA
ATTGATCAACTTTTGCTTGGGCCAGCATACGGAATTCCCAAATTGCTTAGCAAAACAGGA
CTTACACTTAAAGACATTGATGTATGGGAAATTCATGAAGCTTTCGCTGGTCAAATTTTA
GCTAACCTAAAAGCCTTAGATTCTGATTATTTTTGCAAAGATTATTTGAAACTTGGTCAA
AAATATGGTACACCTGACTTAAGCAAATGGAATACATGGGGTGGATCGCTTTCAATTGGA
CATCCTTTTGCAGCTACTGGTGTGAGATTATGTATGCATACATCAAATAGATTAGTTCGT
GAAAATGGTCAATTGGGTGTTGTTGCTGCTTGTGCAGCTGGTGGTCAAGGTGTTGCAATG
TTGATCGAAAGACATCCTGATGCTCATGCTAATTAA

>g2985.t9 Gene=g2985 Length=344
MACISSNQAITTAMGLIATGTYESIVCGGVEFMSDVPIRHSRKMRSLMLKANKAKTLGQR
LSLLSTFRPSFLIPELPAVAEFSSGETMGHSADRLASAFSVSRKEQDDYALRSHTLAKQA
QEKGYFTDLVPFKVDGVEKTINVDNGIRVSTPEALAKLKPAFVKPYGTITAANASYLTDG
ASACLIMTEEKAKALGLKPKAYLRDFIYVSQDPIDQLLLGPAYGIPKLLSKTGLTLKDID
VWEIHEAFAGQILANLKALDSDYFCKDYLKLGQKYGTPDLSKWNTWGGSLSIGHPFAATG
VRLCMHTSNRLVRENGQLGVVAACAAGGQGVAMLIERHPDAHAN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2985.t9 CDD cd00751 thiolase 1 337 7.47841E-129
6 g2985.t9 Gene3D G3DSA:3.40.47.10 - 1 337 2.0E-96
3 g2985.t9 PANTHER PTHR18919:SF147 TRIFUNCTIONAL ENZYME SUBUNIT BETA, MITOCHONDRIAL 1 337 9.8E-158
4 g2985.t9 PANTHER PTHR18919 ACETYL-COA C-ACYLTRANSFERASE 1 337 9.8E-158
7 g2985.t9 PIRSF PIRSF000429 Ac-CoA_Ac_transf 1 339 3.5E-99
2 g2985.t9 Pfam PF00108 Thiolase, N-terminal domain 2 190 4.6E-53
1 g2985.t9 Pfam PF02803 Thiolase, C-terminal domain 197 337 1.4E-43
10 g2985.t9 ProSitePatterns PS00737 Thiolases signature 2. 284 300 -
9 g2985.t9 ProSitePatterns PS00099 Thiolases active site. 319 332 -
5 g2985.t9 SUPERFAMILY SSF53901 Thiolase-like 2 338 4.68E-39
11 g2985.t9 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 1 336 4.5E-99

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values