General information for g2997.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adenylyltransferase and sulfurtransferase MOCS3.
Parent gene
- The parent gene g2997 is located on chr_3: 21891297..21893224 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2997 | g2997.t1 | TTS | g2997.t1 | 21889896 | 21889896 |
| chr_3 | g2997 | g2997.t1 | isoform | g2997.t1 | 21890073 | 21891297 |
| chr_3 | g2997 | g2997.t1 | exon | g2997.t1.exon1 | 21890073 | 21891073 |
| chr_3 | g2997 | g2997.t1 | cds | g2997.t1.CDS1 | 21890073 | 21891073 |
| chr_3 | g2997 | g2997.t1 | exon | g2997.t1.exon2 | 21891135 | 21891297 |
| chr_3 | g2997 | g2997.t1 | cds | g2997.t1.CDS2 | 21891135 | 21891297 |
| chr_3 | g2997 | g2997.t1 | TSS | g2997.t1 | 21891314 | 21891314 |
Sequences
>g2997.t1 Gene=g2997 Length=1164
ATGGCATTATCAAATGAAGAAATTAAGAGATATAGCAGACAAATAATTGTGCCAAATATT
GGTGTTAAAGGACAATTAAAATTAAAGGAATCTAAAGTTATCGTAATTGGAGCTGGTGGA
CTAGGCTGTCCTGTGATTTCTCAGTTATCAGGAGCAGGAATCGGAACTATTGGAATATTA
GATTATGATACAGTCGATTTGACAAATTTGCATCGTCAATTACTTCATACTGTAAATGAT
ATAAATTGCGAAAAAGTAAAATCAGTAGAACGAAATATAAAAGAGCGAAATCCAAATGTT
AACGTCATTACATACAATGTTTTATTGAACTCTTCAAATGCTTTAAATATATTAAGCTCA
TACGATATTGTTGTTGATGCAACTGATAATGTACCAACACGATTTTTGTTAAATGATGCT
TGTGTATTATTGAAAAAGCCATTGGTATCGGGTTCTGCACTACAGCTTGAAGGACAAATA
ACAGTTTATAATTATAATAAAGGACCTTGTTACAGATGTATTTTTCCAAAACCACCACCA
GCTGAAACTATTCAAAATTGTTCAGATGCGGGTGTTATTTCTCCAGTTACAAGCCTCATT
GCATCATTACAATCAATGGAAGTTTTAAAAATTATTTTGAATCATGATAATGTTTTAACA
GAAAAATTGCTTATATATGATGCTGCTGATGTATCTTTTCGTAAAATAAAACTAAGAGGA
CGAAATCCAAGTTGTGAGGTTTGTGGAGACAATCCAACAATTAAAGAGCTTATCGATTAT
GAACAATTTTGTGGAACGTGTGCAGAGGATAAAAATCCAAATTTGAAAATTTTGAAGCAT
GATCAAAGAATGACTGTACAAGAATATGCAAACATGAAGGAAGAACATTTATTGATTGAT
GTACGAAGTCCGAATGAATTTGAAATATGTCATCTTAAAGATGCAATAAATTTGCCAATC
AAAACAATTCAAAGTGGAAAGACAGATGTAAAACTGGTCAATGATATGAAGCTCAAACAA
GTGATTTTTGTGTGCAGACGAGGCAATGATTCTCAAATTGCATCTAAATATTTTTCTGAA
AAATTTAATATACAATCAAAAGACATTATTGGTGGATTATATGAATGGAATAATTCAATT
GATAAAGAATTTCCAATTTATTAA
>g2997.t1 Gene=g2997 Length=387
MALSNEEIKRYSRQIIVPNIGVKGQLKLKESKVIVIGAGGLGCPVISQLSGAGIGTIGIL
DYDTVDLTNLHRQLLHTVNDINCEKVKSVERNIKERNPNVNVITYNVLLNSSNALNILSS
YDIVVDATDNVPTRFLLNDACVLLKKPLVSGSALQLEGQITVYNYNKGPCYRCIFPKPPP
AETIQNCSDAGVISPVTSLIASLQSMEVLKIILNHDNVLTEKLLIYDAADVSFRKIKLRG
RNPSCEVCGDNPTIKELIDYEQFCGTCAEDKNPNLKILKHDQRMTVQEYANMKEEHLLID
VRSPNEFEICHLKDAINLPIKTIQSGKTDVKLVNDMKLKQVIFVCRRGNDSQIASKYFSE
KFNIQSKDIIGGLYEWNNSIDKEFPIY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2997.t1 | CDD | cd00757 | ThiF_MoeB_HesA_family | 10 | 238 | 0.00000 |
| 7 | g2997.t1 | Gene3D | G3DSA:3.40.50.720 | - | 3 | 254 | 0.00000 |
| 8 | g2997.t1 | Gene3D | G3DSA:3.40.250.10 | Oxidized Rhodanese | 282 | 387 | 0.00000 |
| 5 | g2997.t1 | Hamap | MF_03049 | Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. | 1 | 387 | 37.68545 |
| 3 | g2997.t1 | PANTHER | PTHR10953 | UBIQUITIN-ACTIVATING ENZYME E1 | 2 | 362 | 0.00000 |
| 4 | g2997.t1 | PANTHER | PTHR10953:SF102 | ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 | 2 | 362 | 0.00000 |
| 2 | g2997.t1 | Pfam | PF00899 | ThiF family | 11 | 246 | 0.00000 |
| 1 | g2997.t1 | Pfam | PF00581 | Rhodanese-like domain | 287 | 378 | 0.00000 |
| 11 | g2997.t1 | ProSiteProfiles | PS50206 | Rhodanese domain profile. | 292 | 385 | 14.91700 |
| 10 | g2997.t1 | SMART | SM00450 | rhod_4 | 282 | 382 | 0.00000 |
| 6 | g2997.t1 | SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 3 | 354 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008641 | ubiquitin-like modifier activating enzyme activity | MF |
| GO:0005829 | cytosol | CC |
| GO:0004792 | thiosulfate sulfurtransferase activity | MF |
| GO:0002143 | tRNA wobble position uridine thiolation | BP |
KEGG
Orthology
- This transcript has been annotated with K11996 (adenylyltransferase and sulfurtransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
