General information for g2997.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenylyltransferase and sulfurtransferase MOCS3.
Parent gene
- The parent gene g2997 is located on chr_3: 21891297..21893224 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2997 | g2997.t3 | isoform | g2997.t3 | 21889893 | 21890652 |
| chr_3 | g2997 | g2997.t3 | exon | g2997.t3.exon1 | 21889893 | 21890652 |
| chr_3 | g2997 | g2997.t3 | TTS | g2997.t3 | 21889896 | 21889896 |
| chr_3 | g2997 | g2997.t3 | cds | g2997.t3.CDS1 | 21890073 | 21890621 |
| chr_3 | g2997 | g2997.t3 | TSS | g2997.t3 | 21891314 | 21891314 |
Sequences
>g2997.t3 Gene=g2997 Length=760
AGTTACAAGCCTCATTGCATCATTACAATCAATGGAAGTTTTAAAAATTATTTTGAATCA
TGATAATGTTTTAACAGAAAAATTGCTTATATATGATGCTGCTGATGTATCTTTTCGTAA
AATAAAACTAAGAGGACGAAATCCAAGTTGTGAGGTTTGTGGAGACAATCCAACAATTAA
AGAGCTTATCGATTATGAACAATTTTGTGGAACGTGTGCAGAGGATAAAAATCCAAATTT
GAAAATTTTGAAGCATGATCAAAGAATGACTGTACAAGAATATGCAAACATGAAGGAAGA
ACATTTATTGATTGATGTACGAAGTCCGAATGAATTTGAAATATGTCATCTTAAAGATGC
AATAAATTTGCCAATCAAAACAATTCAAAGTGGAAAGACAGATGTAAAACTGGTCAATGA
TATGAAGCTCAAACAAGTGATTTTTGTGTGCAGACGAGGCAATGATTCTCAAATTGCATC
TAAATATTTTTCTGAAAAATTTAATATACAATCAAAAGACATTATTGGTGGATTATATGA
ATGGAATAATTCAATTGATAAAGAATTTCCAATTTATTAATATCTTCAAATAAATATTAT
TTCATTATATTTAGTTGGATTTTTTGTTCAAGATTTTGTCTACATCGTTGAAGATGTCAA
TAGATCTCTCCAATATGCAAAACTCTTTATTATAATCCTCTGTAATGAAATATTTCTTGT
TAAATTAATTTCATTTAATAAAAATGATTTGAAAATTACC
>g2997.t3 Gene=g2997 Length=182
MEVLKIILNHDNVLTEKLLIYDAADVSFRKIKLRGRNPSCEVCGDNPTIKELIDYEQFCG
TCAEDKNPNLKILKHDQRMTVQEYANMKEEHLLIDVRSPNEFEICHLKDAINLPIKTIQS
GKTDVKLVNDMKLKQVIFVCRRGNDSQIASKYFSEKFNIQSKDIIGGLYEWNNSIDKEFP
IY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2997.t3 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 45 | 0.0000320 |
| 8 | g2997.t3 | Gene3D | G3DSA:3.40.250.10 | Oxidized Rhodanese | 77 | 182 | 0.0000000 |
| 2 | g2997.t3 | PANTHER | PTHR10953 | UBIQUITIN-ACTIVATING ENZYME E1 | 2 | 158 | 0.0000000 |
| 3 | g2997.t3 | PANTHER | PTHR10953:SF102 | ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 | 2 | 158 | 0.0000000 |
| 1 | g2997.t3 | Pfam | PF00581 | Rhodanese-like domain | 82 | 173 | 0.0000000 |
| 9 | g2997.t3 | ProSiteProfiles | PS50206 | Rhodanese domain profile. | 87 | 180 | 14.9170000 |
| 6 | g2997.t3 | SMART | SM00450 | rhod_4 | 77 | 177 | 0.0000000 |
| 4 | g2997.t3 | SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 1 | 44 | 0.0000188 |
| 5 | g2997.t3 | SUPERFAMILY | SSF52821 | Rhodanese/Cell cycle control phosphatase | 75 | 173 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008641 | ubiquitin-like modifier activating enzyme activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
