General information for g3030.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acyl-CoA Delta(11) desaturase.
Parent gene
- The parent gene g3030 is located on chr_3: 22212931..22220089 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3030 | g3030.t10 | isoform | g3030.t10 | 22212182 | 22214521 |
| chr_3 | g3030 | g3030.t10 | exon | g3030.t10.exon1 | 22212182 | 22212592 |
| chr_3 | g3030 | g3030.t10 | cds | g3030.t10.CDS1 | 22212286 | 22212585 |
| chr_3 | g3030 | g3030.t10 | exon | g3030.t10.exon2 | 22212679 | 22212818 |
| chr_3 | g3030 | g3030.t10 | exon | g3030.t10.exon3 | 22213134 | 22213274 |
| chr_3 | g3030 | g3030.t10 | exon | g3030.t10.exon4 | 22213362 | 22213417 |
| chr_3 | g3030 | g3030.t10 | exon | g3030.t10.exon5 | 22213489 | 22213537 |
| chr_3 | g3030 | g3030.t10 | TTS | g3030.t10 | 22214491 | 22214491 |
| chr_3 | g3030 | g3030.t10 | exon | g3030.t10.exon6 | 22214497 | 22214521 |
| chr_3 | g3030 | g3030.t10 | TSS | g3030.t10 | NA | NA |
Sequences
>g3030.t10 Gene=g3030 Length=822
GCTTCGTCGTGGGAGGAATTTGCGGATTTGGTGTAACCGGTGGAGCCCATAGATTTTGGT
GTCATCGATCATATAAAGCTAAATTGCCACTTCGTATCATTCTTATGCTCTGCTATTGTA
CGGCTGGACAAAACACTCTCTATGATTGGGTACGAGATCATCGAGTTCATCATAAATGTA
AGTCACATAAATATTTTTGTTATGTCTTATTTTTTTGTAACAAAATTCATCTCTTTATAG
ATTCAGAGACTGACGCAGATCCACATAACTCAAACAGAGGCTTCTTCTTTGCTCATGTTG
GATGGTTGATGTTGCAAAAGCATCCAGAAGTTATTAAAAAAGGTCGTGCCATTGACATGA
GTGATGTTTTGGCCGATCCAGTTATTCAATTTCATCAAAAGTAAGTAGCACCTTGAAATG
AAAAAAACAAAAGAGAAGAGACGAATAAATTTCATAATTAAGTTCACTAACCAACACTAC
TTTAATTTGTAATTGCTAAGATTTTTCCCATTTTAAATGACGCATATGAGAGACACATTT
TCTGCTGATTACATGACAAAACTTTTAATGCATTTTCTTGTAATTAAATTATAGGAGAAT
AAATCCAGTCGAGAATGTTGCAGTTGCTGTTGTTGCTATGGGCGAAGGATGGCATAATTA
TCATCATGTATTTCCTTGGGATTACAAAGCAGCTTCTGAAGACTTGGTGAGAAAGACAGT
TCAAAAATATGGTGATGGTTGTCATTCTAAAATTCTTTAATTGATTTGCATTTTCTTTAG
GCAATTCCTGCACCAGGAGAAAAAAGAAAGCACTCACTTGAC
>g3030.t10 Gene=g3030 Length=99
MLCYCTAGQNTLYDWVRDHRVHHKCKSHKYFCYVLFFCNKIHLFIDSETDADPHNSNRGF
FFAHVGWLMLQKHPEVIKKGRAIDMSDVLADPVIQFHQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3030.t10 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 1 | 25 | 0 |
| 4 | g3030.t10 | PANTHER | PTHR11351:SF21 | GH07782P | 1 | 25 | 0 |
| 1 | g3030.t10 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 47 | 99 | 0 |
| 3 | g3030.t10 | PANTHER | PTHR11351:SF21 | GH07782P | 47 | 99 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed