Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Stearoyl-CoA desaturase 5.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3030 g3030.t12 isoform g3030.t12 22212182 22214905
chr_3 g3030 g3030.t12 exon g3030.t12.exon1 22212182 22212581
chr_3 g3030 g3030.t12 cds g3030.t12.CDS1 22212286 22212581
chr_3 g3030 g3030.t12 exon g3030.t12.exon2 22212663 22213558
chr_3 g3030 g3030.t12 cds g3030.t12.CDS2 22212663 22212672
chr_3 g3030 g3030.t12 exon g3030.t12.exon3 22214521 22214905
chr_3 g3030 g3030.t12 TSS g3030.t12 NA NA
chr_3 g3030 g3030.t12 TTS g3030.t12 NA NA

Sequences

>g3030.t12 Gene=g3030 Length=1681
GCTTCGTCGTGGGAGGAATTTGCGGATTTGGTGTAACCGGTGGAGCCCATAGATTTTGGT
GTCATCGATCATATAAAGCTAAATTGCCACTTCGTATCATTCTTATGCTCTGCTATTGTA
CGGCTGGACAAAACACTCTCTATGATTGGGTACGAGATCATCGAGTTCATCATAAATGTA
AGTCACATAAATATTTTTGTTATGTCTTATTTTTTTGTAACAAAATTCATCTCTTTATAG
ATTCAGAGACTGACGCAGATCCACATAACTCAAACAGAGGCTTCTTCTTTGCTCATGTTG
GATGGTTGATGTTGCAAAAGCATCCAGAAGTTATTAAAAAAGGTCGTGCCATTGACATGA
GTGATGTTTTGGCCGATCCAGTTATTCAATTTCATCAAAATTTCATTTAACACTTACTTG
AAATGAAAAAAACAAAAGAGAAGAGACGAATAAATTTCATAATTAAGTTCACTAACCAAC
ACTACTTTAATTTGTAATTGCTAAGATTTTTCCCATTTTAAATGACGCATATGAGAGACA
CATTTTCTGCTGATTACTAAAAATATGAGCAAAGAAATGATTATAAACACTTGGAAAATA
TTACGTCAATTATTAAATGTTCATGTAACGAAAAATTTAAAACTTTCGATTTTTATTCTA
TTTTACAGATATTTCATCCCTCTTAAAATTCTGTGTTGCTTCATTCTACCAACAATTGTG
CCTGTCTATTTCTGGGGTGAATCATGGTATATGGCTTTCATGTCACAAGCAGTTTTACGT
TATCTCTTCAGTTTGAACTTTACTTGGTTGGTTAATTCGGCTGCTCACATGTGGGGCTAT
AAACCTTACGACAGGTAATCTCAACTCTTACCATGACAAAACTTTTAATGCATTTTCTTG
TAATTAAATTATAGGAGAATAAATCCAGTCGAGAATGTTGCAGTTGCTGTTGTTGCTATG
GGCGAAGGATGGCATAATTATCATCATGTATTTCCTTGGGATTACAAAGCAGCTGAATTG
GGAGATTATAAATTAAACATTACAACTTTCTGGATAGACTTATTTGCTAAAATTGGTTGG
GCTTATGACTTAAAACAACCTTCTGAAGACTTGGTGAGAAAGACAGTTCAAAAATATGGT
GATGGTTGTCATTCTGTGTGGGGACATGGACAATCAGAAAATATTCATGCACCTGTCGAG
GTAACAAATTTAAAATTTGCCATTACAAAATTCTTTAATTGATTTGCATTTTCTTTAGGC
AATTCCTGCACCAGGCGAAGAAAACCTTGGCTATTGCACGTTCTCAAAAATGTATCACAA
CTACGTGTACTCCTTCACGTTCTTTGGATAAAACTCAAATTTTTTTGCGTAACTTTTCAA
AAATATTGAAATACCGGCATTTGAGCTTATTTCATCTCAAACAAAATCATACGATTTTTA
TACTGTCCAATAGCAATCTTCTATATCTCCCTTATTTTAAATATACATAGCGGAATGCAA
TAATGTGTGAAGAAAGAACAATAATCGTGTTGCTTGTATGAAATAAATTTTTAATACATT
ATATTTATTTATTTCTAAGGGTCTTATAATTAGAAATTGATGTTCTTGCGTGATAGAATA
AAATTTTATGCCTTAAAAATAAATTTTTGAAACAGATAAATTGTTGTTTTCATTGAATAC
T

>g3030.t12 Gene=g3030 Length=101
MLCYCTAGQNTLYDWVRDHRVHHKCKSHKYFCYVLFFCNKIHLFIDSETDADPHNSNRGF
FFAHVGWLMLQKHPEVIKKGRAIDMSDVLADPVIQFHQNFI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g3030.t12 PANTHER PTHR11351 ACYL-COA DESATURASE 1 25 0
3 g3030.t12 PANTHER PTHR11351:SF21 GH07782P 1 25 0
2 g3030.t12 PANTHER PTHR11351 ACYL-COA DESATURASE 47 100 0
4 g3030.t12 PANTHER PTHR11351:SF21 GH07782P 47 100 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed