General information for g3031.t27
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acyl-CoA Delta(11) desaturase.
Parent gene
- The parent gene g3031 is located on chr_3: 22218013..22218920 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3031 | g3031.t27 | isoform | g3031.t27 | 22217870 | 22218754 |
| chr_3 | g3031 | g3031.t27 | exon | g3031.t27.exon1 | 22217870 | 22217925 |
| chr_3 | g3031 | g3031.t27 | cds | g3031.t27.CDS1 | 22217875 | 22217925 |
| chr_3 | g3031 | g3031.t27 | exon | g3031.t27.exon2 | 22217988 | 22218754 |
| chr_3 | g3031 | g3031.t27 | cds | g3031.t27.CDS2 | 22217988 | 22218251 |
| chr_3 | g3031 | g3031.t27 | TTS | g3031.t27 | 22218909 | 22218909 |
| chr_3 | g3031 | g3031.t27 | TSS | g3031.t27 | NA | NA |
Sequences
>g3031.t27 Gene=g3031 Length=823
AGAATATGTCAGTTGCTATCTTTGCTCTTGGTGAGGGATTCCACAATTACCACCATGTTT
TCCCCTGGGATTACAAAACAGCTGAACTCGGCAACTACAGAATGAATTTCACTACAGCAT
TTATTGATTTCTTTGCTAAGATTGGCTGGGCTTATGATTTGAAGACCGTGTCAAATGAAA
TTATTCAAAAACGTGTTGAAAGAACGGGAGATGGCACTCATAAGTCATCCAGAGATTCGA
CTTTATGGGGATATGGTGATCCAGCACAAAATGAAGAAGAAAAGAATATGATACCAATTT
TACACAAAAAAGAAGACTAATTTATTAATTCTTAATTTCACTTTTCTTCTAAAGAAACAT
ACAAAAAAATCGTATTAAAAATATTTAATATTTAATATAATGGATGTGGATCTCCAGTGA
ATTAAACTATTTCTTTTCGCTGTATCAATTGAAAATTATCAATAGTTCTGAAAGTAAAAC
TTTAAATACCTAAAGAAAGAAGTGGTTGAAGATTAACTTGATTCAGGTTTTTGCACGCAG
TTCACTGGAACAACAACACATAGAAAACTTTAATACAAATTATATATATCAACATATTTT
TGGATAATGACTACTAAAAGTAATAATATTGCAGAACGAATAAGAAGAAAAAGAGATCTT
AATTCTTTTTTTCGCTCTCTCTCTCTCTCTATATATATATATAATGATGATTTGATATGG
AAACATAACTGTCTTAAAAATAAGTTAGTGAGAGAGAAATTGGACATTTTGTAATATGTA
AAAGAAAGTAAATATAGAACAAGATTCCATTGGAATTAAGAAT
>g3031.t27 Gene=g3031 Length=104
MSVAIFALGEGFHNYHHVFPWDYKTAELGNYRMNFTTAFIDFFAKIGWAYDLKTVSNEII
QKRVERTGDGTHKSSRDSTLWGYGDPAQNEEEKNMIPILHKKED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g3031.t27 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 2 | 104 | 4.3E-41 |
| g3031.t27 | PANTHER | PTHR11351:SF91 | DESATURASE 1, ISOFORM A-RELATED | 2 | 104 | 4.3E-41 |
| g3031.t27 | ProSitePatterns | PS00476 | Fatty acid desaturases family 1 signature. | 9 | 23 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
