General information for g3045.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc transporter ZIP13-like protein.
Parent gene
- The parent gene g3045 is located on chr_3: 22328852..22330342 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3045 | g3045.t11 | TTS | g3045.t11 | 22327224 | 22327224 |
| chr_3 | g3045 | g3045.t11 | isoform | g3045.t11 | 22327462 | 22329331 |
| chr_3 | g3045 | g3045.t11 | exon | g3045.t11.exon1 | 22327462 | 22328199 |
| chr_3 | g3045 | g3045.t11 | cds | g3045.t11.CDS1 | 22327462 | 22328178 |
| chr_3 | g3045 | g3045.t11 | exon | g3045.t11.exon2 | 22328272 | 22328398 |
| chr_3 | g3045 | g3045.t11 | exon | g3045.t11.exon3 | 22328843 | 22329331 |
| chr_3 | g3045 | g3045.t11 | TSS | g3045.t11 | 22329328 | 22329328 |
Sequences
>g3045.t11 Gene=g3045 Length=1354
ATTCTGTAGTGAGCAATTGAGTCATCCGGTTGTGCTAAGAAAAGAAGTGCCTTAGAAGAG
AAAAATCTGTACTATATTTCATTACTTTCTTTGTGTATCAATAAAGTTTATAATTTTTTC
TCTTTCTATCATTTTAGCCAATTCTTTTATCGAGTGTATTTTAAGTGGAAGCAACTAAAT
CAATTGATTGAATTGCAAATTCGAAGCAATGAACAGTTATTAATACGATTCTTTGAAACT
ACAAAAATTACTTTTAATTGAAATTTCTTCTGATAATAACCATCAACTTCTTATTTACTC
AAATGAATTCATCAATGGATGCCATTTCAACAATTTTGGATCTATATGTGCCCGAGTACA
TAAAAACTATAGAATATGTGCCATGGATATTTTCTTTATTTGGATCAGCACTAATAGGTT
TAAGTGGTATATTACCACTATTAATTATACCAAACCATGAACCAGGCAAAGAAAGTGAAA
TGAAAAATCCTGCAGATTCAAAATTCTTAAAAACGCTGTTGAGTTTTGCTGTTGGTGGTC
TATTGGGTGATGTTTTTTTACATTTGCTACCAGAAGCATGGGAATCAGATATGAAGGATA
GAAGTCTCAGCGGTTACATCCATCGATAAGAAGCGGCATGTGGGTGTTATCGGGAGTTTT
AATTTTTACAATTGTGGAGAAAATCTTCAGTGGCTATGCAAATGCAGATGAAAATAATCC
TCAACCGAAATGTGTTGAAATTGCAAATTGTTTGCTTCGTCGGAATGGTGGAAAATTGCC
TGAAGGAGCAGTCAGCTGTGCCCCAAACGGATCTTGTGATATAGAAGATATTCCTAATGG
TATTCCTTGCTTCTTGGCTGAAAAAGATAAAAAAGGAAAAGAACCGCCATCAAAAAAAGT
CGCAGGATATTTAAATTTACTTGCAAACAGCATTGACAACTTTACACATGGTTTAGCAGT
TGCTGGTTCTTTTTTGGTATCTTTAAGACATGGAATTTTAGCAACGTTTGCAATTTTACT
GCATGAAATTCCACATGAAGTTGGCGATTTTGCAATTTTACTACGGTCTGGTTTCACACG
ATGGGATGCAGCCAAAGCTCAATTATTGACAGCTGGTGCTGGTTTATTAGGCGCACTCGT
AGCAATTGGAGGTTCAGGCGTGACTTCAGCTATGGAAGCAAGAACATCTTGGATCATGCC
TTTTACAGCAGGCGGCTTTTTACATATTGCTCTTGTAACAGTTCTTCCTGATTTACTTGA
AGAAGAGGATAAAATTGAATCATTAAAGCAATTAGGAGCATTAGTGCTCGGCATTGTTGT
GATGGCTGTGCTCACCGTTACATTAGAACATTGA
>g3045.t11 Gene=g3045 Length=238
MWVLSGVLIFTIVEKIFSGYANADENNPQPKCVEIANCLLRRNGGKLPEGAVSCAPNGSC
DIEDIPNGIPCFLAEKDKKGKEPPSKKVAGYLNLLANSIDNFTHGLAVAGSFLVSLRHGI
LATFAILLHEIPHEVGDFAILLRSGFTRWDAAKAQLLTAGAGLLGALVAIGGSGVTSAME
ARTSWIMPFTAGGFLHIALVTVLPDLLEEEDKIESLKQLGALVLGIVVMAVLTVTLEH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3045.t11 | PANTHER | PTHR16950 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 | 1 | 233 | 1.5E-73 |
| 1 | g3045.t11 | Pfam | PF02535 | ZIP Zinc transporter | 2 | 232 | 5.8E-41 |
| 9 | g3045.t11 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 155 | - |
| 14 | g3045.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 156 | 179 | - |
| 11 | g3045.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 180 | 184 | - |
| 13 | g3045.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 185 | 207 | - |
| 8 | g3045.t11 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 208 | 218 | - |
| 12 | g3045.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 236 | - |
| 10 | g3045.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 237 | 238 | - |
| 7 | g3045.t11 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
| 6 | g3045.t11 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 23 | - |
| 3 | g3045.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 156 | 178 | - |
| 5 | g3045.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 185 | 204 | - |
| 4 | g3045.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 236 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0046873 | metal ion transmembrane transporter activity | MF |
| GO:0030001 | metal ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K14719 (solute carrier family 39 (zinc transporter), member 13)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
