General information for g3046.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcriptional adapter 3.
Parent gene
- The parent gene g3046 is located on chr_3: 22331087..22333355 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3046 | g3046.t2 | isoform | g3046.t2 | 22331087 | 22333355 |
| chr_3 | g3046 | g3046.t2 | exon | g3046.t2.exon1 | 22331087 | 22332870 |
| chr_3 | g3046 | g3046.t2 | cds | g3046.t2.CDS1 | 22331087 | 22332529 |
| chr_3 | g3046 | g3046.t2 | exon | g3046.t2.exon2 | 22333173 | 22333355 |
| chr_3 | g3046 | g3046.t2 | TSS | g3046.t2 | 22333355 | 22333355 |
| chr_3 | g3046 | g3046.t2 | TTS | g3046.t2 | NA | NA |
Sequences
>g3046.t2 Gene=g3046 Length=1967
AGTGCGTTTAGAAATCTTTTCTAGGAACCTAAAATATCGAGAAAATAATTGAGATAATTA
AATAGTAAGGATATTTTGCGAGCTAAAATAATATTAGAGGAATTATTTATATACATTCGT
ATTCGTGAACTGTGCTCGTAGGCTCAAAAAATTTGTAATTTCACCATAATTCATCGATTT
TATCTGTAGCTGTTTTCATATATATACACACACCATACTTTTGTATTTTTCTTCTTTTCC
ACCCGTCGTCGTTTCTCGTCAAATATAAAAAAGAAAAAAAATGGCACATTGAGTGGAAAG
TCGAAAGACGAGAGAAAAATATTACTTCATGCCCATCTCGCATTCTTATTCTGAATGTCG
GAAATACAAATTCAATTATATTATCATTTGAATCGTAAAAAGATATTCTCAAAAGGAAAA
ATTGTGTTCAATTTGGAAGAAGAAAAAAATACATATATTAGGAGAGAGACGTCCAAGAAG
TGAGTGAGTGAATAAAAACAACAACAAAAGAAGTATAGTCAGCAATGGCTGAGAAAGGAA
GTGGCAAGAGATTTACACATACAAAGGGTAAAGGGAAAGTGATGTCAAAACCATCACCTG
AATCAATAGAGCCCTCATCACCTTCACCGAGCATTCCATTAATACGTTGCCAAGACAATT
CAGAGCAGTTGCCAAAGTATCATGCAGCACTAATGCGATCAGCGACAGGCGAATTACCAC
CTGATGATCTAGAACAAATTCAAGCAGAGCTCGAGACACTTCTATCGACAGTTGCATTAA
GATACAGAGTACTAAAATCAGAATCGGAATCAAATGACAGTCGTAGAACAAAATATCTGG
ATCGAGCTCCTATATCACCTGATAAAAGAAGAAGACCAACTGCCACAGCTATCAGCAGCG
GTAAACCACGAAAATTTTCAACAAATTCACCACTTAATCACCCGCCTACAAAAATCTCAA
AGCTGAAAAATTCATCAGCCTCACCTGCACCCAGTCAACATACCGATGACAGTTCAGATG
TGTCAAGTCATAATCCAAAACATATATATCATCGTAATGACACACCTAATAAATTTTGGC
TTTCAATAGAACCTTTCACAGTGCCAATAAATCAAGAAGACATTCGATTACTTGATGTAC
TGTTAGAAGAATATTCAGGTCCATTAGCACCACAAATTCCAGAGCTTGGTCCTCATTATA
CGACACAATGGGGAATTGAAGATGTAAAAGAGGAACAAGATGGAAGTAATGCACAATCAA
TAAAAGGAAAGGCAAAAGCAACTACCAATGGTCAGCAGAATGGTGATATGATGCGTGTGC
TGAGAAATAGTAAGAAAATGGGCGAGGGCATAACTGGACCATTTACACAGAAAATTGTGA
GTGCTCTGATAGAAGAGAATCTCATTAACGATGGTCATCATCATCATTCAACGGCAACTG
CCACCACAACAAGTACAGAAAATTCCAATAGTAGTCTTGAAAATATACCAAATAACACCA
ATATGATGCACACGAGAAGTGCTGCAAATTTGCTAAAAAATGGCATTGCAGCCGAACGTA
GAATACGAAAAGAACTGATTGAACAGGGAATTTTAGAGGCAAAAGATGTTGCACCAAGTG
GAGAACGACAAGTAGAAGACGAAGATGTTGACGAAGTACTGACAGAAATTCAAAAAGTTC
GTTCCGATCTGATAGCAATTGCAGAATCAAACACTAGCCAATTGACGACACTCAAAGAAG
TCGCACACAAAGAATTGAAACGACTGGAGATTAAAAGAAAACTCGATGATGTCGATCATG
AGATAGTTGAACAAAATAAACGTGTACAACTAGCAAAGCAAAAGGGTCGTTCATTAACGA
AAAGTGAGCGTGACGAAATATTACGACTGATAGATAAGCAGAGGAAGCTGAGTAATGAGC
TAGAGAATTTAAGTATTCCAGGCTATACGATTCCTTTTCTCACTTAG
>g3046.t2 Gene=g3046 Length=480
MAEKGSGKRFTHTKGKGKVMSKPSPESIEPSSPSPSIPLIRCQDNSEQLPKYHAALMRSA
TGELPPDDLEQIQAELETLLSTVALRYRVLKSESESNDSRRTKYLDRAPISPDKRRRPTA
TAISSGKPRKFSTNSPLNHPPTKISKLKNSSASPAPSQHTDDSSDVSSHNPKHIYHRNDT
PNKFWLSIEPFTVPINQEDIRLLDVLLEEYSGPLAPQIPELGPHYTTQWGIEDVKEEQDG
SNAQSIKGKAKATTNGQQNGDMMRVLRNSKKMGEGITGPFTQKIVSALIEENLINDGHHH
HSTATATTTSTENSNSSLENIPNNTNMMHTRSAANLLKNGIAAERRIRKELIEQGILEAK
DVAPSGERQVEDEDVDEVLTEIQKVRSDLIAIAESNTSQLTTLKEVAHKELKRLEIKRKL
DDVDHEIVEQNKRVQLAKQKGRSLTKSERDEILRLIDKQRKLSNELENLSIPGYTIPFLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g3046.t2 | Coils | Coil | Coil | 420 | 440 | - |
| 6 | g3046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - |
| 4 | g3046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 114 | - |
| 7 | g3046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 170 | - |
| 5 | g3046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 164 | - |
| 2 | g3046.t2 | PANTHER | PTHR13556 | TRANSCRIPTIONAL ADAPTER 3-RELATED | 21 | 168 | 5.1E-58 |
| 3 | g3046.t2 | PANTHER | PTHR13556 | TRANSCRIPTIONAL ADAPTER 3-RELATED | 159 | 469 | 5.1E-58 |
| 1 | g3046.t2 | Pfam | PF10198 | Histone acetyltransferases subunit 3 | 342 | 450 | 2.1E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K11315 (transcriptional adapter 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
