General information for g3058.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3058 is located on chr_3: 22368868..22370980 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3058 | g3058.t1 | isoform | g3058.t1 | 22368868 | 22370980 |
| chr_3 | g3058 | g3058.t1 | exon | g3058.t1.exon1 | 22368868 | 22369413 |
| chr_3 | g3058 | g3058.t1 | cds | g3058.t1.CDS1 | 22368868 | 22369413 |
| chr_3 | g3058 | g3058.t1 | exon | g3058.t1.exon2 | 22370258 | 22370980 |
| chr_3 | g3058 | g3058.t1 | cds | g3058.t1.CDS2 | 22370258 | 22370980 |
| chr_3 | g3058 | g3058.t1 | TSS | g3058.t1 | NA | NA |
| chr_3 | g3058 | g3058.t1 | TTS | g3058.t1 | NA | NA |
Sequences
>g3058.t1 Gene=g3058 Length=1269
ATGGAAAACTGGATCAAATACAAAGAGTTGCCCTCAAAGAAACAACTCGAAGTCGATTTT
TGGAATTTTGTAAACAAAAATCCTAAGTTTAAGGATCAAATGATTAAGGTCGGCAAATCA
TCTCTGAAAAAAGTAAAGGGATTCGCAACATCAGATAAAACTTTAAGATATGGATCACAT
GACAGATACGAAATACTGCAAGCTGAACATATTTTCTGTGAAGCTCCAACTGAAAAAATA
GCATTTCAAATTGAATCAATGTGTCAAAAAATAACTGAAGAAAATGGACGGCTAATCAAA
CTCTCAGATAGAGGTGGAGGTGGACAAAGCATCACTGAAAATCGACGATTTATCGTTTAT
GTAACTATATTTAAAAATGATTTATTTAGTTGTCCGATCCAGCCTTGCTCAAGAATTTCT
CCTCACAATTACATGATTGAACACATTCAAAACGACCATCCTTGTGCAAATCAAACTGAA
CGCGGCAATCAATTGCTTGAAGCATTAGGCATTGAGAAGATGGATATTAATTATGAGCCG
ATTCCATGGTCTTATGAAAGTACACTTAGTACTAATTGTCCTGCTTGCGGAAAGCACTTT
GAGACACGAGCTGAAACAGGAGTTCACTACAGACATCACTGTGAGCAAAACATCAACCGC
CGAGAGAAAGAACCTTGCGACCTTTGTGGTGCTATGGTCTGCCCTATTGATATGCGGCGA
CACATTGCCAATCTTCACAATAATGCAGACTGTCTAGAATGTGATTATTGTGGCAAAATA
TTAACTCGTGAGGGAATGGTGTATCACGTGAAAGTGCATGTTGGACAGCATAAAATTGAA
TGCAATATCTGCCACAAGATGATCAATTATAAAAAAATTGATGAACACAAAAAATACCAG
CACACTGAAGAGACACGACCGAAAAAAGCATGTCCTGTTTGTGGAAAACTTGCTACAAAC
CTCGGCACTCACATGAAAATGCATGAGAAAGAGCAGTGCCCAACATGTTTGAAATATTTT
ACAAAACAATCCATAAAAGCACACATTAAGACGCACACAAAGAAAAATGAACCAAAAAAA
GTGGAGCCAAAGGTTGCTTGCGAAACTTGTGGAAAGATGGGCACAAAAACTTGGCTCTAT
TCGCATAAAAAAACTCACTTGCCACGACAAAAATGCAAGTTTTGTGGAAAAGAGTACTCT
GCTGACAGAATGCGCAAGCACATTAAAATTCATCAACAGCCATCGACATCAAAATCAAAT
AACAAGTAG
>g3058.t1 Gene=g3058 Length=422
MENWIKYKELPSKKQLEVDFWNFVNKNPKFKDQMIKVGKSSLKKVKGFATSDKTLRYGSH
DRYEILQAEHIFCEAPTEKIAFQIESMCQKITEENGRLIKLSDRGGGGQSITENRRFIVY
VTIFKNDLFSCPIQPCSRISPHNYMIEHIQNDHPCANQTERGNQLLEALGIEKMDINYEP
IPWSYESTLSTNCPACGKHFETRAETGVHYRHHCEQNINRREKEPCDLCGAMVCPIDMRR
HIANLHNNADCLECDYCGKILTREGMVYHVKVHVGQHKIECNICHKMINYKKIDEHKKYQ
HTEETRPKKACPVCGKLATNLGTHMKMHEKEQCPTCLKYFTKQSIKAHIKTHTKKNEPKK
VEPKVACETCGKMGTKTWLYSHKKTHLPRQKCKFCGKEYSADRMRKHIKIHQQPSTSKSN
NK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g3058.t1 | PANTHER | PTHR24376:SF171 | LD39136P | 162 | 413 | 8.5E-21 |
| 2 | g3058.t1 | PANTHER | PTHR24376 | ZINC FINGER PROTEIN | 162 | 413 | 8.5E-21 |
| 12 | g3058.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 193 | 213 | - |
| 13 | g3058.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 191 | 218 | 9.369 |
| 8 | g3058.t1 | SMART | SM00355 | c2h2final6 | 129 | 153 | 35.0 |
| 4 | g3058.t1 | SMART | SM00355 | c2h2final6 | 191 | 213 | 15.0 |
| 6 | g3058.t1 | SMART | SM00355 | c2h2final6 | 224 | 246 | 74.0 |
| 10 | g3058.t1 | SMART | SM00355 | c2h2final6 | 252 | 273 | 5.6 |
| 5 | g3058.t1 | SMART | SM00355 | c2h2final6 | 279 | 301 | 49.0 |
| 3 | g3058.t1 | SMART | SM00355 | c2h2final6 | 309 | 328 | 33.0 |
| 7 | g3058.t1 | SMART | SM00355 | c2h2final6 | 331 | 352 | 15.0 |
| 9 | g3058.t1 | SMART | SM00355 | c2h2final6 | 365 | 386 | 30.0 |
| 11 | g3058.t1 | SMART | SM00355 | c2h2final6 | 390 | 411 | 3.7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
