General information for g3089.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3089 is located on chr_3: 22638452..22639446 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3089 | g3089.t3 | TSS | g3089.t3 | 22638244 | 22638244 |
| chr_3 | g3089 | g3089.t3 | isoform | g3089.t3 | 22638268 | 22639446 |
| chr_3 | g3089 | g3089.t3 | exon | g3089.t3.exon1 | 22638268 | 22638595 |
| chr_3 | g3089 | g3089.t3 | exon | g3089.t3.exon2 | 22638759 | 22639446 |
| chr_3 | g3089 | g3089.t3 | cds | g3089.t3.CDS1 | 22639093 | 22639446 |
| chr_3 | g3089 | g3089.t3 | TTS | g3089.t3 | 22639493 | 22639493 |
Sequences
>g3089.t3 Gene=g3089 Length=1016
ATGAAGTTGACATTTTTCGTAATTTTGTTAATTGTTATAATTAAAAGTGTTTCATCGCAA
GTTCTTTGTTTATTTGCACAAGTTAATGGTTTATACACTTGCACAGCAACTATAATTAAT
CCATTAGGATTAAACAATTTCACTCAAGTTGAAGGCATACATTTTACAGGCGGAACTGAT
GAAGATGTCGTAAGAATTGAGAGAAATGCAGTTTCAAATACACTGAATTTTCCATCAATA
TTTTGTAATCAATTTGGAAACACTGAATCAATTATCATTGATAATATTGGCATTGAAAGA
ATTGATGAAAATGCATTTGCTGATTGTCACTTGCTTCAAATCAACTTCAAGAGCTACCAA
GCGATATTTTCAATCAATTGTCAGAACTTGGAATGTTAAATTTAGATTCAAATCAACTAC
AAGATTTGCCTGAAGGAATTTTCGATAACCTACCAAATCTTTATTATCTTTCATTTTCAT
TTAACCAAATTGTAAAACTAAGAGAAAATTTGATTGATAAACTTTACAGCATTCAAAATT
TTTTGGCTCCTTTCAATCAAATCATTTATATTCCACGAAACTTCTTTGATGGAAATCCTT
ATCTTTCGAGCATTATTATCAGTGGAAATAATTTAACAATACTTGAATTAAATCCTATTC
CAATGCTTTCTGATTTTTGGTTCGAACATAATCAAATTAATGCAATTGATGAGAGAATTT
TTAATAATGTGACACTTAGATCGTTAAATGGCGGTCCAAATCCATGTGCTGATAGAAATG
GCATAATTTCAAATCCAACAAATGATGACATCAGAGCAGCGTTGCATAGATGTTTTGATA
ATTTCAATCCAATTGAAACGACAACAACACCTGGAGAAGAAATTACAAAACCAACAACAG
AGCCAAATGGGTGTGAAGTTGGAAATATTGAAGAAAGAATTTGTCAATTGGAGGCTGAAA
ATGCCGAATTGAGAGCGAGACTGGAATATTTGGAGAAAATTGTTTTAGGTCGTTAA
>g3089.t3 Gene=g3089 Length=117
MLSDFWFEHNQINAIDERIFNNVTLRSLNGGPNPCADRNGIISNPTNDDIRAALHRCFDN
FNPIETTTTPGEEITKPTTEPNGCEVGNIEERICQLEAENAELRARLEYLEKIVLGR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g3089.t3 | CDD | cd14686 | bZIP | 88 | 114 | 0.0056598 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed