Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3089 g3089.t4 TSS g3089.t4 22638244 22638244
chr_3 g3089 g3089.t4 isoform g3089.t4 22638452 22639446
chr_3 g3089 g3089.t4 exon g3089.t4.exon1 22638452 22638746
chr_3 g3089 g3089.t4 exon g3089.t4.exon2 22638866 22639446
chr_3 g3089 g3089.t4 cds g3089.t4.CDS1 22639093 22639446
chr_3 g3089 g3089.t4 TTS g3089.t4 22639493 22639493

Sequences

>g3089.t4 Gene=g3089 Length=876
ATGTCGTAAGAATTGAGAGAAATGCAGTTTCAAATACACTGAATTTTCCATCAATATTTT
GTAATCAATTTGGAAACACTGAATCAATTATCATTGATAATATTGGCATTGAAAGAATTG
ATGAAAATGCATTTGCTGATTGTCGTGATCTTGAATATTTGTTATTGCAATCTAATAGAC
TACGAGAAATTCATGAAAATGCATTCAGTGAAAATTTGCAATTATCAATTTTGGATTTAT
CGAACAATCAATTAATTCGATTACCTGGAAATTTGTTTAGAAATCAAATTAATTTGAATT
TTCGATAACCTACCAAATCTTTATTATCTTTCATTTTCATTTAACCAAATTGTAAAACTA
AGAGAAAATTTGATTGATAAACTTTACAGCATTCAAAATTTTTTGGCTCCTTTCAATCAA
ATCATTTATATTCCACGAAACTTCTTTGATGGAAATCCTTATCTTTCGAGCATTATTATC
AGTGGAAATAATTTAACAATACTTGAATTAAATCCTATTCCAATGCTTTCTGATTTTTGG
TTCGAACATAATCAAATTAATGCAATTGATGAGAGAATTTTTAATAATGTGACACTTAGA
TCGTTAAATGGCGGTCCAAATCCATGTGCTGATAGAAATGGCATAATTTCAAATCCAACA
AATGATGACATCAGAGCAGCGTTGCATAGATGTTTTGATAATTTCAATCCAATTGAAACG
ACAACAACACCTGGAGAAGAAATTACAAAACCAACAACAGAGCCAAATGGGTGTGAAGTT
GGAAATATTGAAGAAAGAATTTGTCAATTGGAGGCTGAAAATGCCGAATTGAGAGCGAGA
CTGGAATATTTGGAGAAAATTGTTTTAGGTCGTTAA

>g3089.t4 Gene=g3089 Length=117
MLSDFWFEHNQINAIDERIFNNVTLRSLNGGPNPCADRNGIISNPTNDDIRAALHRCFDN
FNPIETTTTPGEEITKPTTEPNGCEVGNIEERICQLEAENAELRARLEYLEKIVLGR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g3089.t4 CDD cd14686 bZIP 88 114 0.0056598

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed