General information for g3108.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3108 is located on chr_3: 22853439..22855709 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3108 | g3108.t6 | TTS | g3108.t6 | 22852532 | 22852532 |
| chr_3 | g3108 | g3108.t6 | isoform | g3108.t6 | 22852864 | 22855709 |
| chr_3 | g3108 | g3108.t6 | exon | g3108.t6.exon1 | 22852864 | 22852915 |
| chr_3 | g3108 | g3108.t6 | cds | g3108.t6.CDS1 | 22852864 | 22852915 |
| chr_3 | g3108 | g3108.t6 | exon | g3108.t6.exon2 | 22852976 | 22853176 |
| chr_3 | g3108 | g3108.t6 | cds | g3108.t6.CDS2 | 22852976 | 22853176 |
| chr_3 | g3108 | g3108.t6 | exon | g3108.t6.exon3 | 22853358 | 22853437 |
| chr_3 | g3108 | g3108.t6 | cds | g3108.t6.CDS3 | 22853358 | 22853437 |
| chr_3 | g3108 | g3108.t6 | exon | g3108.t6.exon4 | 22853957 | 22854174 |
| chr_3 | g3108 | g3108.t6 | cds | g3108.t6.CDS4 | 22853957 | 22854174 |
| chr_3 | g3108 | g3108.t6 | exon | g3108.t6.exon5 | 22855415 | 22855709 |
| chr_3 | g3108 | g3108.t6 | cds | g3108.t6.CDS5 | 22855415 | 22855478 |
| chr_3 | g3108 | g3108.t6 | TSS | g3108.t6 | NA | NA |
Sequences
>g3108.t6 Gene=g3108 Length=846
TGATTAAAAAATTTCTTTTTCACTTGAAAAACTTTTTTATTCTTAAATTTCAATTTATAA
TCCAAATGTAGGGCGTCAAATGTTTTGCTTATTTTTTCACTAAAATTGATGTTTTTATTT
GTCACATTTAATTGCAATTGATGCTTTGTTTACCCAATTACACAATTAAATAAAATTATT
TACTTTTTGATTATTATTGATTAGTAAAAATAAGAAAAACTAATATTCAAGATGGATACA
AGTTCAAAAAAAATTTTTGTCTTTGTTGTTGTAATAATTTGTGGTGAATTTTATAATCGA
CTTACTCCACCACTTCCGTTTTCCTCTGGCGAAGAATATTTGAGACTATTGAAGGAAGCG
CAAAAAGAATCAAATAATTCAAGTCGAATTAGTTCACGGCGTGATTCACCCAAGAACTTC
AGTCCAAAAAGTCCACCAAACAGTCCAAATCCTGAACCGTGTGTTAATGATGAAGAACTC
AAAGGCGTTTTTATCAATTATTATGCGGTCAAGGATCAGGAAAAGGAGAAAGATAAGGAT
GATCATGATTGGATGTGGCAATGGAGTAGCGGCGTTGACAAATTTCCTCCAAAAGACTGG
AAATTTGAGCATCCTGAAAATGGCAATTCGAATGTGTCTTCACCAATTCCACCCGTATTA
ACCAAGGATGCTCGTACAATGAATTATTCAATGCGTCTGGCACGTGTTGGTGGCAATTCA
CTTTTCTCAAAGGAAGTTCTTTATTCACTTGTCATCACGAATGTTCTTTCTATTTTGATT
GGCGCTGGAATTGGCGTCTGGTTATCGAAACGCGGTTTCATCTTTACACGCTTGGCAGTT
GAGTGA
>g3108.t6 Gene=g3108 Length=204
MDTSSKKIFVFVVVIICGEFYNRLTPPLPFSSGEEYLRLLKEAQKESNNSSRISSRRDSP
KNFSPKSPPNSPNPEPCVNDEELKGVFINYYAVKDQEKEKDKDDHDWMWQWSSGVDKFPP
KDWKFEHPENGNSNVSSPIPPVLTKDARTMNYSMRLARVGGNSLFSKEVLYSLVITNVLS
ILIGAGIGVWLSKRGFIFTRLAVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3108.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 64 | - |
| 6 | g3108.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 78 | - |
| 2 | g3108.t6 | PANTHER | PTHR15186:SF5 | RE48077P | 25 | 199 | 3.8E-47 |
| 3 | g3108.t6 | PANTHER | PTHR15186 | RE48077P | 25 | 199 | 3.8E-47 |
| 1 | g3108.t6 | Pfam | PF06553 | BNIP3 | 27 | 200 | 2.4E-51 |
| 7 | g3108.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 6 | - |
| 11 | g3108.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 24 | - |
| 9 | g3108.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 25 | 168 | - |
| 10 | g3108.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 169 | 191 | - |
| 8 | g3108.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 192 | 204 | - |
| 4 | g3108.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 169 | 191 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005740 | mitochondrial envelope | CC |
| GO:0043065 | positive regulation of apoptotic process | BP |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K15464 (BCL2/adenovirus E1B 19 kDa protein-interacting protein 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
