General information for g3165.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as MOB kinase activator-like 3.
Parent gene
- The parent gene g3165 is located on chr_3: 23414152..23415292 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3165 | g3165.t1 | TTS | g3165.t1 | 23413630 | 23413630 |
| chr_3 | g3165 | g3165.t1 | isoform | g3165.t1 | 23414152 | 23415292 |
| chr_3 | g3165 | g3165.t1 | exon | g3165.t1.exon1 | 23414152 | 23414290 |
| chr_3 | g3165 | g3165.t1 | cds | g3165.t1.CDS1 | 23414152 | 23414290 |
| chr_3 | g3165 | g3165.t1 | exon | g3165.t1.exon2 | 23414343 | 23414573 |
| chr_3 | g3165 | g3165.t1 | cds | g3165.t1.CDS2 | 23414343 | 23414573 |
| chr_3 | g3165 | g3165.t1 | exon | g3165.t1.exon3 | 23414645 | 23414889 |
| chr_3 | g3165 | g3165.t1 | cds | g3165.t1.CDS3 | 23414645 | 23414889 |
| chr_3 | g3165 | g3165.t1 | exon | g3165.t1.exon4 | 23415245 | 23415292 |
| chr_3 | g3165 | g3165.t1 | cds | g3165.t1.CDS4 | 23415245 | 23415292 |
| chr_3 | g3165 | g3165.t1 | TSS | g3165.t1 | 23415448 | 23415448 |
Sequences
>g3165.t1 Gene=g3165 Length=663
ATGAACAATTTTCTAGACTTTTTCCATTTATTGGATAAAAAAGGAAAAACTTTTCGACCA
AAGAAAAGATTTACGCATGGAACAATTCGGTACTCACTGCATAAACAGGCCCAAGCAAGT
CTTCAATCTGGCATTAATCTTAAAGAAGTCGTGAGACTTCCTGCGAATGAAAATATGAAT
GACTGGCTCGCTGTACATGTAGTAGATTTTTTCAACAGAATAAATTTAATTTATGGAACT
GTTTCTGAATATTGTACTGAAACTACATGTCCGAAAATGAGTGGTGGTAGTAGGTACGAA
TATTTCTGGCAAGATGGTGAAAAATTCAAAAAACCAACGCCTCTTCCCGCACCGAAATAT
ATTGAAAATCTTATGGACTGGGTTGAAGGTCAAATTAACAACGAAGATATTTTTCCAGTT
ACCACAGATATTCCTTTTCCAAAGACTTTTGTCACATTGAGCAAAAAAATTCTAACTCGG
CTGTTTCGTGTATTTGTTCATGTTTATATTCATCATTTTGATAGAATCGTTTCAATTGGT
GCCGAACCACATGTTAACACATGCTTCAAGCATTTTTACTATTTTGTAACAGAATTTGAT
CTCATCCCAGCAAAAGAAATGGAACCATTAATTGAGTTAGTGAAGCAAATTTGCAAAGAT
TGA
>g3165.t1 Gene=g3165 Length=220
MNNFLDFFHLLDKKGKTFRPKKRFTHGTIRYSLHKQAQASLQSGINLKEVVRLPANENMN
DWLAVHVVDFFNRINLIYGTVSEYCTETTCPKMSGGSRYEYFWQDGEKFKKPTPLPAPKY
IENLMDWVEGQINNEDIFPVTTDIPFPKTFVTLSKKILTRLFRVFVHVYIHHFDRIVSIG
AEPHVNTCFKHFYYFVTEFDLIPAKEMEPLIELVKQICKD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g3165.t1 | Gene3D | G3DSA:1.20.140.30 | Mob1/phocein | 7 | 220 | 0 |
| 2 | g3165.t1 | PANTHER | PTHR22599:SF11 | MOB KINASE ACTIVATOR-LIKE 3 | 5 | 218 | 0 |
| 3 | g3165.t1 | PANTHER | PTHR22599 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB | 5 | 218 | 0 |
| 1 | g3165.t1 | Pfam | PF03637 | Mob1/phocein family | 38 | 210 | 0 |
| 5 | g3165.t1 | SMART | SM01388 | Mob1_phocein_2 | 36 | 210 | 0 |
| 4 | g3165.t1 | SUPERFAMILY | SSF101152 | Mob1/phocein | 20 | 219 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
