Gene loci information

Transcript annotation

  • This transcript has been annotated as 3-ketoacyl-CoA thiolase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3180 g3180.t4 TSS g3180.t4 23501050 23501050
chr_3 g3180 g3180.t4 isoform g3180.t4 23501147 23502618
chr_3 g3180 g3180.t4 exon g3180.t4.exon1 23501147 23501169
chr_3 g3180 g3180.t4 exon g3180.t4.exon2 23501311 23502167
chr_3 g3180 g3180.t4 cds g3180.t4.CDS1 23501388 23502167
chr_3 g3180 g3180.t4 exon g3180.t4.exon3 23502238 23502418
chr_3 g3180 g3180.t4 cds g3180.t4.CDS2 23502238 23502418
chr_3 g3180 g3180.t4 exon g3180.t4.exon4 23502479 23502618
chr_3 g3180 g3180.t4 cds g3180.t4.CDS3 23502479 23502618
chr_3 g3180 g3180.t4 TTS g3180.t4 23502737 23502737

Sequences

>g3180.t4 Gene=g3180 Length=1201
ATGTCAGCTGCAACAAAAGGTTAGAGTTTTCATTGTCAGTGCTCGCCGAACAGCCTTTGG
TACATTTGGCGGTACTTTCAAGACAACAACACCAACTGCGATGCAAACAGTCGCTGCACA
AGCTGCTCTTAAAGATGCCGGTGTCTCACCCGATAAAGTCGATACTGTTGTCATTGGAAA
TATCATGCCACACACTCAGACTGATGGAATTTATATGGCACGTCACGTTGCACTCAACTG
TGGAATTCCACAAGAAAGACCAGCACTTGCTGTAAATCGTTTATGCGGATCTGGATTCCA
AAGTATTGTCAACGGTGCTCATGACATTCTTGTATCAGGAGCAAAAGTTGTTTTGACTGG
AGGTGTTGAATCAATGAGTTTGGCACCTTATGTTGCTAGAAATATGCGTTTTGGTTCACC
TCTTGGTGTTAATCCTGTTCTTGAAGATTCATTATGGGCTGGCTTAACTGATACTTATTG
TAAATTGCCTATGGCATTAACTGCTGAAAAATTGGGTGAACAATACAAAATCACAAGAGA
CAAAGTCGATGAATTTTCATACAATTCACAACAAAGATGGGCAAAAGCAAATGCTGAAGG
TGCATTTACAGCTGAAATTACACCATTTCCAACAAAAGTCAAAGGCAAAGAAGTTGAATT
TAAAGTTGATGAACATCCACGTCCACAGACAACACTCGAAGGTTTAGCAAAATTGCCAAG
TTTGTTCAAAAAAGATGGCCTTGTGACTGCAGGAACAGCGTCAGGAATTTCAGACGGTGC
AAGCGCAGTTGTGCTTGCTTCAGAAGAGGCTTTAAAGGAATACAATTTAAAACCACTTGC
AAGACTTGTCGCTTATTCAACTGTTGGCGTTGATCCATCTATTATGGGAATCGGTCCAGT
TCCAGCTATTCAAAATGTTTTAAAATTATCAGGCTGGAATTTGAATGATTTGGATTTGGT
TGAAATCAATGAAGCATTTGCTGCTCAAACTTTGGCTTGTGCTGAAGCATTGAAACTTGA
TCTTAATAAACTAAATGTTAACGGTGGTGCTGTTGCATTAGGTCATCCTCTTGGAGCATC
TGGATCAAGAATTACAGCACATTTAGTGCATGAAATGAAGAGAAAAGGCTATAAGAAATC
AGTTGGATCAGCTTGCATTGGTGGTGGACAAGGAATTGCATTATTGCTTGAGTCAGTTTA
A

>g3180.t4 Gene=g3180 Length=366
MQTVAAQAALKDAGVSPDKVDTVVIGNIMPHTQTDGIYMARHVALNCGIPQERPALAVNR
LCGSGFQSIVNGAHDILVSGAKVVLTGGVESMSLAPYVARNMRFGSPLGVNPVLEDSLWA
GLTDTYCKLPMALTAEKLGEQYKITRDKVDEFSYNSQQRWAKANAEGAFTAEITPFPTKV
KGKEVEFKVDEHPRPQTTLEGLAKLPSLFKKDGLVTAGTASGISDGASAVVLASEEALKE
YNLKPLARLVAYSTVGVDPSIMGIGPVPAIQNVLKLSGWNLNDLDLVEINEAFAAQTLAC
AEALKLDLNKLNVNGGAVALGHPLGASGSRITAHLVHEMKRKGYKKSVGSACIGGGQGIA
LLLESV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3180.t4 CDD cd00751 thiolase 3 364 0.0
8 g3180.t4 Gene3D G3DSA:3.40.47.10 - 4 249 2.7E-132
7 g3180.t4 Gene3D G3DSA:3.40.47.10 - 100 362 2.7E-132
3 g3180.t4 PANTHER PTHR18919:SF107 3-KETOACYL-COA THIOLASE, MITOCHONDRIAL 2 365 2.2E-172
4 g3180.t4 PANTHER PTHR18919 ACETYL-COA C-ACYLTRANSFERASE 2 365 2.2E-172
9 g3180.t4 PIRSF PIRSF000429 Ac-CoA_Ac_transf 1 366 2.5E-113
2 g3180.t4 Pfam PF00108 Thiolase, N-terminal domain 2 236 4.5E-68
1 g3180.t4 Pfam PF02803 Thiolase, C-terminal domain 243 364 5.5E-51
11 g3180.t4 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 58 76 -
12 g3180.t4 ProSitePatterns PS00737 Thiolases signature 2. 312 328 -
5 g3180.t4 SUPERFAMILY SSF53901 Thiolase-like 2 243 5.43E-65
6 g3180.t4 SUPERFAMILY SSF53901 Thiolase-like 244 364 6.76E-43
13 g3180.t4 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 5 364 9.0E-121

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed