General information for g3211.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 12.
Parent gene
- The parent gene g3211 is located on chr_3: 23683379..23684707 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3211 | g3211.t1 | TSS | g3211.t1 | 23683145 | 23683145 |
| chr_3 | g3211 | g3211.t1 | isoform | g3211.t1 | 23683379 | 23684707 |
| chr_3 | g3211 | g3211.t1 | exon | g3211.t1.exon1 | 23683379 | 23684707 |
| chr_3 | g3211 | g3211.t1 | cds | g3211.t1.CDS1 | 23683379 | 23684707 |
| chr_3 | g3211 | g3211.t1 | TTS | g3211.t1 | NA | NA |
Sequences
>g3211.t1 Gene=g3211 Length=1329
ATGGAAATTGACATTGTCAGTGAGAAATTGGAAGAAATTTCAATTGAAAATATTCAAATA
ATTAAAGCAAAACCATTCAATGAAGCAATAAATGAATTGACAAATTTAGAAAAGAAATAT
CGTACAGTTGGTGATGCAATTTCACTTGGTCGAATTTTGGTTGCATTTGTTGAAATCTTT
TACGATTCATCAAAATTAACAGAGCTCAATGAATGCATAATAACTTTTAGTCTCAAGAAA
CATCTTCAATCAGAATTAGCAATTGCTGCAATGCTCAGAAAATGCTGTGAATTTGTTGAC
TTGATCAGTGATATTTCAATCAAAACGAAACTTTTAGAAACATTAAAATTTGTGACAGAT
GGAAAACTTTATGCTGAAATTGAAAGAGCTAAAATATGTAAAGAATTGTCACTGTTAAGA
AAGAATGTTGATAATGACATTGAAAGTGCAATAAAAACACTTGAAGATCTAAAAATTGAC
ACAATAACATCATTGGAAAAGAAGGAAAGAATTGAAATAATTTTACAACTTATGGAACTT
CTTATAGAGTCAAAAGATAATGTCAAATGCCTTATTGTAGCCAAAAAGATCAACAAACAG
CATCTTGATCAAACTGTTGAATATGAAGAACTAAAAATTCGTTATTATCAACTTATGATC
ATAATTGATAAATATAAAAATTATTTAAATACATCACGACATTATCAATCAATAATTGAC
ACAAAATTGATGCAAAATGATGAAAATAAAGATGAAAGAATGAAATTCATGGCATTGGCA
ATTGTTTATTGCATTTTATCACCATTTGATAGTGAAAAACTCAACATGATGCAGAAATTA
ATGAAACATAAGTTTTTATCGGAAGTTCCAAAATATCGAGATTTACTCAAAGAATATACA
ACAATTGAACTTATAAATTGGTACACAATGAAAGCACAATTTAAAGATGATTTATTGGCA
CTTGGGATTTTCGATGTCAATACTCAAGAAGGTCTAAAATGTTGGAAAGATCTTAGAACA
GCAACAATTGAGCACAATATCAAAGTTTTTGCAACTTATTACCAACGCGCTTATCTTTCA
CATATGAGTGAATTTTTAGACATAAATATTGATGAAACTGAAAAACATCTTTGCAATCTC
ATCGTAAATAAATCGATAAAAGCAAAAATTGATAGACTAACAGGAATTGTGACATTTAGT
CAATACAAGAATGGAATTAATGATAAACAAGAAAACGTTTTACAAGATTGGCTACAACAA
GTTGAAACACTCATGAAACTTATCGATAATACTTCACATCTCATTAATAATGAAGAATCT
GAGCTTTAA
>g3211.t1 Gene=g3211 Length=442
MEIDIVSEKLEEISIENIQIIKAKPFNEAINELTNLEKKYRTVGDAISLGRILVAFVEIF
YDSSKLTELNECIITFSLKKHLQSELAIAAMLRKCCEFVDLISDISIKTKLLETLKFVTD
GKLYAEIERAKICKELSLLRKNVDNDIESAIKTLEDLKIDTITSLEKKERIEIILQLMEL
LIESKDNVKCLIVAKKINKQHLDQTVEYEELKIRYYQLMIIIDKYKNYLNTSRHYQSIID
TKLMQNDENKDERMKFMALAIVYCILSPFDSEKLNMMQKLMKHKFLSEVPKYRDLLKEYT
TIELINWYTMKAQFKDDLLALGIFDVNTQEGLKCWKDLRTATIEHNIKVFATYYQRAYLS
HMSEFLDINIDETEKHLCNLIVNKSIKAKIDRLTGIVTFSQYKNGINDKQENVLQDWLQQ
VETLMKLIDNTSHLINNEESEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g3211.t1 | Coils | Coil | Coil | 140 | 160 | - |
| 10 | g3211.t1 | Coils | Coil | Coil | 407 | 427 | - |
| 8 | g3211.t1 | Gene3D | G3DSA:1.10.10.10 | winged helix repressor DNA binding domain | 330 | 410 | 8.2E-12 |
| 3 | g3211.t1 | PANTHER | PTHR10855:SF1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 | 8 | 439 | 3.4E-106 |
| 4 | g3211.t1 | PANTHER | PTHR10855 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 | 8 | 439 | 3.4E-106 |
| 2 | g3211.t1 | Pfam | PF01399 | PCI domain | 290 | 400 | 1.5E-17 |
| 1 | g3211.t1 | Pfam | PF18098 | 26S proteasome regulatory subunit RPN5 C-terminal domain | 412 | 439 | 6.7E-5 |
| 11 | g3211.t1 | ProSiteProfiles | PS50250 | PCI domain profile. | 230 | 404 | 17.382 |
| 6 | g3211.t1 | SMART | SM00088 | PINT_4 | 333 | 417 | 6.1E-11 |
| 7 | g3211.t1 | SMART | SM00753 | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 333 | 417 | 6.1E-11 |
| 5 | g3211.t1 | SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 333 | 404 | 2.37E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed