General information for g3275.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lipase member H-A.
Parent gene
- The parent gene g3275 is located on chr_3: 24133909..24135410 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3275 | g3275.t1 | isoform | g3275.t1 | 24128497 | 24135410 |
| chr_3 | g3275 | g3275.t1 | exon | g3275.t1.exon1 | 24128497 | 24128688 |
| chr_3 | g3275 | g3275.t1 | cds | g3275.t1.CDS1 | 24128497 | 24128688 |
| chr_3 | g3275 | g3275.t1 | exon | g3275.t1.exon2 | 24134150 | 24134434 |
| chr_3 | g3275 | g3275.t1 | cds | g3275.t1.CDS2 | 24134150 | 24134434 |
| chr_3 | g3275 | g3275.t1 | exon | g3275.t1.exon3 | 24134536 | 24134710 |
| chr_3 | g3275 | g3275.t1 | cds | g3275.t1.CDS3 | 24134536 | 24134710 |
| chr_3 | g3275 | g3275.t1 | exon | g3275.t1.exon4 | 24134768 | 24134846 |
| chr_3 | g3275 | g3275.t1 | cds | g3275.t1.CDS4 | 24134768 | 24134846 |
| chr_3 | g3275 | g3275.t1 | exon | g3275.t1.exon5 | 24134965 | 24135107 |
| chr_3 | g3275 | g3275.t1 | cds | g3275.t1.CDS5 | 24134965 | 24135107 |
| chr_3 | g3275 | g3275.t1 | exon | g3275.t1.exon6 | 24135175 | 24135410 |
| chr_3 | g3275 | g3275.t1 | cds | g3275.t1.CDS6 | 24135175 | 24135410 |
| chr_3 | g3275 | g3275.t1 | TSS | g3275.t1 | NA | NA |
| chr_3 | g3275 | g3275.t1 | TTS | g3275.t1 | NA | NA |
Sequences
>g3275.t1 Gene=g3275 Length=1110
ATGATATCAAATCAACAAACAAAAGATAAGAAAGAAAATGTTGTAAATAAATCAATTGTA
AACAACATTTGTGCAGCAAACAGTAAGCAAGCAACAGCAGCAGGTGATGAAAATATTTTT
TTCAACAGCATCAAGTTGTCATTTCCTGACTATAAAAAAATAATGTTGTATGAAATGGAC
ATGTTATTTCTGGTCGATGGAGGAATTAATTTTCTCTTCTTTGGCAGTAATTTTTCTGAC
TATGTCAGTACAACATTAAATTATAATTTCACAAGTCTCCAAAATACAAAATATTTCAAT
ATCAATAAGCCAACTGCAGTTTTTCTTCATGGTTGGGGAACTTCCTTCGTAGCATCTGTT
AATCAAGCTTTAGCTGTTGCTTTCATCAGTAGAGGCGATTACAATACAATTATTGTTGAT
TGGAGTAAATATGCATCAGATCCCGATTATTATGAAGTTGCAGCTTCGATTAATGATCAA
GCAACTTTCATTGTTCAAGTTCTAATTCAAATGCAAAATGCTGGTTACAATTTAACATCT
ATTTACTTCATGGGTCATAGTTTAGGAGCAAATATTCTTGGTCGCGTTGGTTATCAACTC
ATTAAAAATTATAATTTTACTCCTACAAGAATTTCTGGCATTGAACCAACTGGTGTATTT
TTTGGAAATTTCAATGAATGGCCTACAGGAATTTCTTTACTTTTTCCTATACTCAACTTT
CTCAATGCAAAATTTGTCGACATAATTCATACTGACATATATGGTCAAGGTGAAAATTAT
CCAGTTGGTCATATGGATTTTTGGCCTAATTTTGGTCATGATCAGCCTGCTTGCAGTATT
AATCCATTTTATTTCACATGCAATCCTTGGAATGATAACTGTCTTAATTGCAATCACATT
CGTTCCTTGAAATATTTCACTGAATCTGTTAGTTCAGGTTTAGTAAGAAAATTTAAATCA
CGTTTGTGTAATGGTACTAATTATTTCACTAGTGCTTGCTATGCTGTTGTAGCATCAATG
GGTTTTTATGCTGACAATTATGCTAATAATCCTGGAAATTATTTCCTTACAACTACTGGT
GTTTCACCTTATTCTGTTTCGAATTTTTAA
>g3275.t1 Gene=g3275 Length=369
MISNQQTKDKKENVVNKSIVNNICAANSKQATAAGDENIFFNSIKLSFPDYKKIMLYEMD
MLFLVDGGINFLFFGSNFSDYVSTTLNYNFTSLQNTKYFNINKPTAVFLHGWGTSFVASV
NQALAVAFISRGDYNTIIVDWSKYASDPDYYEVAASINDQATFIVQVLIQMQNAGYNLTS
IYFMGHSLGANILGRVGYQLIKNYNFTPTRISGIEPTGVFFGNFNEWPTGISLLFPILNF
LNAKFVDIIHTDIYGQGENYPVGHMDFWPNFGHDQPACSINPFYFTCNPWNDNCLNCNHI
RSLKYFTESVSSGLVRKFKSRLCNGTNYFTSACYAVVASMGFYADNYANNPGNYFLTTTG
VSPYSVSNF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g3275.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 62 | 365 | 1.8E-59 |
| 2 | g3275.t1 | PANTHER | PTHR11610 | LIPASE | 69 | 365 | 1.1E-54 |
| 5 | g3275.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 93 | 112 | 2.5E-10 |
| 3 | g3275.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 180 | 198 | 2.5E-10 |
| 4 | g3275.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 297 | 312 | 2.5E-10 |
| 1 | g3275.t1 | Pfam | PF00151 | Lipase | 91 | 364 | 7.2E-35 |
| 9 | g3275.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 70 | 364 | 8.11E-43 |
| 8 | g3275.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 61 | 83 | - |
| 6 | g3275.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 107 | 129 | - |
| 7 | g3275.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 325 | 344 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed