Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Pickpocket protein 28.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3276 g3276.t2 isoform g3276.t2 24152566 24154984
chr_3 g3276 g3276.t2 exon g3276.t2.exon1 24152566 24152701
chr_3 g3276 g3276.t2 cds g3276.t2.CDS1 24152566 24152701
chr_3 g3276 g3276.t2 exon g3276.t2.exon2 24152760 24153119
chr_3 g3276 g3276.t2 cds g3276.t2.CDS2 24152760 24153119
chr_3 g3276 g3276.t2 exon g3276.t2.exon3 24153260 24153544
chr_3 g3276 g3276.t2 cds g3276.t2.CDS3 24153260 24153544
chr_3 g3276 g3276.t2 exon g3276.t2.exon4 24153596 24154153
chr_3 g3276 g3276.t2 cds g3276.t2.CDS4 24153596 24154153
chr_3 g3276 g3276.t2 exon g3276.t2.exon5 24154206 24154432
chr_3 g3276 g3276.t2 cds g3276.t2.CDS5 24154206 24154432
chr_3 g3276 g3276.t2 exon g3276.t2.exon6 24154487 24154616
chr_3 g3276 g3276.t2 cds g3276.t2.CDS6 24154487 24154616
chr_3 g3276 g3276.t2 exon g3276.t2.exon7 24154899 24154984
chr_3 g3276 g3276.t2 cds g3276.t2.CDS7 24154899 24154984
chr_3 g3276 g3276.t2 TSS g3276.t2 NA NA
chr_3 g3276 g3276.t2 TTS g3276.t2 NA NA

Sequences

>g3276.t2 Gene=g3276 Length=1782
ATGAAGCTAACGTTTGAAGAATATTGTAAATCATCAACAATTCATGGTTTCAAATATTTA
TCCAAGAAATACGATTGGATTGAAAAAATATTCTGGGTGTTTTCTTTATTGACATCTTTA
ACACTCACTTTAATTTTGATATCACAATTGATAAATAAAATTAAAACCGTTCCAATCATT
ATTTCTATTTTAGAAAAATCTATTCCAATATCTGAGATTGATTTTCCTGCAGTTACATTA
TGTCAAGGCTTAATACAAGATTTATCTAATCATAAAGAAATAACTTATTTTCAACGTCAT
TCTTATACATATAGTTACTATGACAATGATGAAGTTTTTGAAATCACAAAAGATGAAGAA
AAATTCAACAATATTTCTTATTTAACAATTTTAGATAAAATTGAAAAAGGTGAAATTAAA
CTAGAAGAACTTGGAAATAAAATATTAAAACGTTTGCAAGTGATTGATCTTTTAACACAT
CGTGGTGTTTTTGCGAGAAAAAATTTTCACATTCCAACAATTGACTTTTTGGATGTTATT
AATGAATTTAGAAAGTACAGTATATTTAAATATCCAGTTTCTTACGAATATGCATCAACA
GATAATGTAATTAGTTCTTCAGAATCAATTACAAATCTTGGAGTTTGCTTCTCTTTTAAT
AATCCTCCTTATGAATATTTACTTGATTCGACAAAAGTTTCTGATGATTTTAAGTACGAA
TTATTTATTGATCGCAAAATTGAAAAAAATCAAACGTTTATTGCACCAATTAGATCAAAA
TTGGTAAATAATATGCTTATGGTCACATTTTCAACTGATTTAACAGTAACTGAAATTAAT
AATCATATTGATGGAGGAATAATGTACATTCATGATCCTTATGAATTGCCATCTAGTTTT
TCGAAAATTATGTCAATGAACACTAACGCAAATATTGAAATTTATCTTGAACCACAATAT
ATCACAATTGATGAATCGCTTTATGATGCTAATATTTCTGAACGTAATTGTTACCATTCT
GATGAACGACAATTAAAAATCTTCAAAGTTTACACAAAAAACAACTGTTTGGTTGAATGT
TTGACAGAATTCATGATTCGAAAATGTGGATGTGTTGAATTTTTCATGATTCGAAATTAT
ACAACTCGAATTTGTTCAGCAAGTGAAAAAGAATGTTTTGATAACGCTCAACAAGAATTT
TATAATTATTTAAATAGTTGTAATTGTTTAGAATCATGCAGTTATATCAAATATGTGCTG
GATATTGTTAAAAAGCCAAATATTTATGACAACTTTTATGACAATGAATCTTTTACTCAA
ATTAATATTAAATATAAAAATTCACTTATTGATGAAATTGTAAGAAAACGACAATTTAAT
GAAGTTGATTTTCTTTCATTCGTTGGTGGTCTTTTGAATCTATTTGCTGGCTTTTCTGCT
TTGTCTTTTATTGAAATTTTGTATTGGGCATTTGCTGCAAGAATTTATGATAAACTTAAA
ATTAAAAATACTTCACTTGTTTATCCATTGGGAACTCAATTTTCGTTTAAAACTTCAAAA
AAATTTACAAATGTTCCTCAAAAATTCTTTAAGAATTCATCAGCTCATGGATTATTATAC
CTTGATGAAGAAAGCTCATTTAAAAAATTTTTTTGGATGATTTTTATTGCAATATCATTA
AGTTTGTGTTTTACAATGATTATTAAAGTTAAAGATGAGCTTTCGCATAGCTATATTGTA
GGATATGATGATGAAATGACTTTTGATGAAGAAGTATTTTAA

>g3276.t2 Gene=g3276 Length=593
MKLTFEEYCKSSTIHGFKYLSKKYDWIEKIFWVFSLLTSLTLTLILISQLINKIKTVPII
ISILEKSIPISEIDFPAVTLCQGLIQDLSNHKEITYFQRHSYTYSYYDNDEVFEITKDEE
KFNNISYLTILDKIEKGEIKLEELGNKILKRLQVIDLLTHRGVFARKNFHIPTIDFLDVI
NEFRKYSIFKYPVSYEYASTDNVISSSESITNLGVCFSFNNPPYEYLLDSTKVSDDFKYE
LFIDRKIEKNQTFIAPIRSKLVNNMLMVTFSTDLTVTEINNHIDGGIMYIHDPYELPSSF
SKIMSMNTNANIEIYLEPQYITIDESLYDANISERNCYHSDERQLKIFKVYTKNNCLVEC
LTEFMIRKCGCVEFFMIRNYTTRICSASEKECFDNAQQEFYNYLNSCNCLESCSYIKYVL
DIVKKPNIYDNFYDNESFTQINIKYKNSLIDEIVRKRQFNEVDFLSFVGGLLNLFAGFSA
LSFIEILYWAFAARIYDKLKIKNTSLVYPLGTQFSFKTSKKFTNVPQKFFKNSSAHGLLY
LDEESSFKKFFWMIFIAISLSLCFTMIIKVKDELSHSYIVGYDDEMTFDEEVF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g3276.t2 PANTHER PTHR11690:SF222 ACID-SENSING ION CHANNEL 5 4 492 2.1E-48
4 g3276.t2 PANTHER PTHR11690 AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED 4 492 2.1E-48
2 g3276.t2 Pfam PF00858 Amiloride-sensitive sodium channel 8 488 3.7E-63
1 g3276.t2 Pfam PF00858 Amiloride-sensitive sodium channel 529 583 7.7E-7
10 g3276.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 29 -
12 g3276.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 30 51 -
9 g3276.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 52 463 -
13 g3276.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 464 491 -
11 g3276.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 492 549 -
14 g3276.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 550 568 -
8 g3276.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 569 593 -
7 g3276.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 30 52 -
6 g3276.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 470 492 -
5 g3276.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 550 568 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0005272 sodium channel activity MF
GO:0006814 sodium ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed