General information for g3303.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3303 is located on chr_3: 24452592..24453407 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3303 | g3303.t1 | isoform | g3303.t1 | 24452592 | 24453407 |
| chr_3 | g3303 | g3303.t1 | exon | g3303.t1.exon1 | 24452592 | 24453407 |
| chr_3 | g3303 | g3303.t1 | cds | g3303.t1.CDS1 | 24452592 | 24453407 |
| chr_3 | g3303 | g3303.t1 | TSS | g3303.t1 | NA | NA |
| chr_3 | g3303 | g3303.t1 | TTS | g3303.t1 | NA | NA |
Sequences
>g3303.t1 Gene=g3303 Length=816
ATGTTGAGGCAAGCATCAATGCCAAAACTTTCAAATTACTCTTTAAATGTCAGCACAAAG
TATAAACATAAATTTCAATTTCGTATGAAAGAACAACAATTCAATGATTCAAAAATGAAA
CAATGTCGTTTTAAATCAATCGTGATTCATAAACCTGAAACATTGTTAAGACTCTTAACA
ATTGATTACGATGAGATAAAAATTGATCATTCAATGAATATCGAAATAACACCAAAAATC
ATCAAAACCGATATGAGTCTAGAAAAAATTGATCCATTTTTGAGAGATTGTTATTTTGAG
AATGAGAAAAAGTTGAAATATTTTAAGACTTATACACAACATTACTGTGAAATGGAATGC
TTACTGCTATTTCATGAAAAAAAGCATGATTGTCGAGAAGTTTACACAATATATGGAAAA
AATAATTCAAAGCCTTTTTGTTTAGCCATTTTCTCAAAGCTTTTAAGAGAAAAATTAGAA
AATAGTCAAAACTTTTCATTTAAACAAAACTGTTCATGTTTGCCGACTTGTGATTCAATT
GAATATCATGTTGATGTTTATCCAAGTGATGATGGTGCAGATGATAATGAAACTTTTGTC
ATCAATGTCAGAATGAACACAGACAACATGATTTTATTTCGACGATATCAACAATTTTCA
TTTTCTGATGCTATTTCTTATGTTGGTGGTTTGCTTGGACTTTTTGCTAGAATTTCAGTT
TTATCAATTGTTGAAATCTTTTATTTTATTACATTGCGATTGTTGAATAATATTTTGAGA
TTTTTAAAAATGTTAAAAATTAATCAATTATTTTAA
>g3303.t1 Gene=g3303 Length=271
MLRQASMPKLSNYSLNVSTKYKHKFQFRMKEQQFNDSKMKQCRFKSIVIHKPETLLRLLT
IDYDEIKIDHSMNIEITPKIIKTDMSLEKIDPFLRDCYFENEKKLKYFKTYTQHYCEMEC
LLLFHEKKHDCREVYTIYGKNNSKPFCLAIFSKLLREKLENSQNFSFKQNCSCLPTCDSI
EYHVDVYPSDDGADDNETFVINVRMNTDNMILFRRYQQFSFSDAISYVGGLLGLFARISV
LSIVEIFYFITLRLLNNILRFLKMLKINQLF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3303.t1 | Gene3D | G3DSA:2.60.470.10 | - | 84 | 217 | 2.6E-16 |
| 6 | g3303.t1 | Gene3D | G3DSA:1.10.287.820 | - | 89 | 177 | 2.6E-16 |
| 7 | g3303.t1 | Gene3D | G3DSA:1.10.287.770 | - | 218 | 247 | 2.6E-16 |
| 2 | g3303.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 43 | 258 | 1.3E-17 |
| 3 | g3303.t1 | PANTHER | PTHR11690:SF237 | NACH, ISOFORM E-RELATED | 43 | 258 | 1.3E-17 |
| 1 | g3303.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 22 | 249 | 3.9E-27 |
| 8 | g3303.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 223 | - |
| 10 | g3303.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 224 | 250 | - |
| 9 | g3303.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 251 | 271 | - |
| 4 | g3303.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 234 | 256 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed