General information for g3304.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3304 is located on chr_3: 24454197..24456913 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3304 | g3304.t1 | isoform | g3304.t1 | 24454197 | 24456913 |
| chr_3 | g3304 | g3304.t1 | exon | g3304.t1.exon1 | 24454197 | 24454292 |
| chr_3 | g3304 | g3304.t1 | cds | g3304.t1.CDS1 | 24454197 | 24454292 |
| chr_3 | g3304 | g3304.t1 | exon | g3304.t1.exon2 | 24454345 | 24454435 |
| chr_3 | g3304 | g3304.t1 | cds | g3304.t1.CDS2 | 24454345 | 24454435 |
| chr_3 | g3304 | g3304.t1 | exon | g3304.t1.exon3 | 24454520 | 24454654 |
| chr_3 | g3304 | g3304.t1 | cds | g3304.t1.CDS3 | 24454520 | 24454654 |
| chr_3 | g3304 | g3304.t1 | exon | g3304.t1.exon4 | 24455451 | 24455738 |
| chr_3 | g3304 | g3304.t1 | cds | g3304.t1.CDS4 | 24455451 | 24455738 |
| chr_3 | g3304 | g3304.t1 | exon | g3304.t1.exon5 | 24455793 | 24456338 |
| chr_3 | g3304 | g3304.t1 | cds | g3304.t1.CDS5 | 24455793 | 24456338 |
| chr_3 | g3304 | g3304.t1 | exon | g3304.t1.exon6 | 24456828 | 24456913 |
| chr_3 | g3304 | g3304.t1 | cds | g3304.t1.CDS6 | 24456828 | 24456913 |
| chr_3 | g3304 | g3304.t1 | TSS | g3304.t1 | NA | NA |
| chr_3 | g3304 | g3304.t1 | TTS | g3304.t1 | NA | NA |
Sequences
>g3304.t1 Gene=g3304 Length=1242
ATGAAGTTTGAATTGGAAAAATATTTTGAATCATCAACAATTCATGGATTTAAATATTTA
TCGAAGAAATTTCATTGGATTGAAAGGTTTGAACGTTTGCAATTTGTTGATCTTTTAACT
GACCGAGGTGAATTTGCAACAAAAAATTTATCAATTTCTACAGAAAAAATTTTCAAGATT
ATAAAAGAATTTCAAGTATATTATAATAATAAATTTTATTTTTATGATTGGACTAATTCT
ACTTATGTGTCTGAAAGTGTAATGAAACAAAAGTTGTGTATTACATACAATAATCCACCA
CATGAAACAGTTTTTAATTTAAATTCAATTCCTGATGATTTTTGTTATGAATATGTTAAA
ACAAACAAAACAGAAAAGGAAAATTCTACAAATGTCATCCCAAAAAGAGCAAAATATCTT
TCACAAAAATTATTGATAACTTCAATGCATATTGGATCTTTTAAAGGTGAAATCAGTAAT
AGTTTTAAAGGACAATCAATTGCTTTACATGATTCTTATGAACTTTCTTCAATATTCTTA
CAACCTTTTCAATATGATTTTAATGTTAAAATACAAATTGAGCCTCAGTTTATAACAATT
GATGAATCACTTTATGATGCTGATATTTTTAAATGCAATTGTTTTCATCCTGATGAGAGA
CAATTAAAAATCTTCAAAGTTTACACAAAGAACAACTGTTTAGTTGAATGTCTGACAGAA
TCCATGATTGAAAAGTGTGGCTGTGTTGAATTTTTCATGATTCGAAATTTTACAACTCGA
ATATGTTCAGCAAGTGAGAAGAAATGTTTTGATAGAGCTAAAAGAGAATTTGAAAATCAT
TTACATCATTGCAATTGTCTTGAACCATGTACATATATCAAATATATGTGTGAATTCAAG
AAAAAAACACTAGATGGATTACGAAACACAACGAAAATCCACCCAATGACTATTAGTCAA
GTAATGGAAATAAGAGCAACAAATCGTTGGAGTTATCTTGAAAATTCCTCAATTCATGGA
CTTTCATATTTTAACAACACAAAATTCTTTGAAAATTTATGTTTTGCAATGATTTTAGAT
TTTCAATATAAATATTCTAATTCTTATACTATTGGACCTGATGATGCAATGACTTATCGC
AGATTAATTCCGTTTCCAGCTATCACCTTTATACCAAGCTATTTTGTTGATGAAGAACTT
TTTTTAAATATAACAGAAATAAATATACTGAACACGAAATAA
>g3304.t1 Gene=g3304 Length=413
MKFELEKYFESSTIHGFKYLSKKFHWIERFERLQFVDLLTDRGEFATKNLSISTEKIFKI
IKEFQVYYNNKFYFYDWTNSTYVSESVMKQKLCITYNNPPHETVFNLNSIPDDFCYEYVK
TNKTEKENSTNVIPKRAKYLSQKLLITSMHIGSFKGEISNSFKGQSIALHDSYELSSIFL
QPFQYDFNVKIQIEPQFITIDESLYDADIFKCNCFHPDERQLKIFKVYTKNNCLVECLTE
SMIEKCGCVEFFMIRNFTTRICSASEKKCFDRAKREFENHLHHCNCLEPCTYIKYMCEFK
KKTLDGLRNTTKIHPMTISQVMEIRATNRWSYLENSSIHGLSYFNNTKFFENLCFAMILD
FQYKYSNSYTIGPDDAMTYRRLIPFPAITFIPSYFVDEELFLNITEINILNTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g3304.t1 | Gene3D | G3DSA:1.10.287.820 | - | 210 | 290 | 0 |
| 2 | g3304.t1 | PANTHER | PTHR11690:SF222 | ACID-SENSING ION CHANNEL 5 | 160 | 302 | 0 |
| 3 | g3304.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 160 | 302 | 0 |
| 1 | g3304.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 82 | 300 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed