General information for g3306.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3306 is located on chr_3: 24460549..24463495 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3306 | g3306.t1 | isoform | g3306.t1 | 24460549 | 24463495 |
| chr_3 | g3306 | g3306.t1 | exon | g3306.t1.exon1 | 24460549 | 24460886 |
| chr_3 | g3306 | g3306.t1 | cds | g3306.t1.CDS1 | 24460549 | 24460886 |
| chr_3 | g3306 | g3306.t1 | exon | g3306.t1.exon2 | 24460968 | 24461386 |
| chr_3 | g3306 | g3306.t1 | cds | g3306.t1.CDS2 | 24460968 | 24461386 |
| chr_3 | g3306 | g3306.t1 | exon | g3306.t1.exon3 | 24461441 | 24461686 |
| chr_3 | g3306 | g3306.t1 | cds | g3306.t1.CDS3 | 24461441 | 24461686 |
| chr_3 | g3306 | g3306.t1 | exon | g3306.t1.exon4 | 24462349 | 24462711 |
| chr_3 | g3306 | g3306.t1 | cds | g3306.t1.CDS4 | 24462349 | 24462711 |
| chr_3 | g3306 | g3306.t1 | exon | g3306.t1.exon5 | 24463398 | 24463495 |
| chr_3 | g3306 | g3306.t1 | cds | g3306.t1.CDS5 | 24463398 | 24463495 |
| chr_3 | g3306 | g3306.t1 | TSS | g3306.t1 | NA | NA |
| chr_3 | g3306 | g3306.t1 | TTS | g3306.t1 | NA | NA |
Sequences
>g3306.t1 Gene=g3306 Length=1464
ATGTTTGATAATGGAAAAGTTTTGGTTATTTTTTATGTTGACATTTTGGATGCAATTGAA
AGAAATGAAATTAAAATTGATAAGTTAGACATGGAAATAGACAATCTTTTTACGAAAGTT
CATCAAAAGGCTTATTCAATAAATTTTAAGTACAAAAACATTCAAATCAGTGAAATTAAA
AGAAAACGACAATTTAATGAAGTTGATTTTCTTTCATTTATTGGTGGCCTTTTAGGAGTT
TTTGCTGGCTTTTCTTTTTTATCGTTTATTGAAATATTTTATTGGCTGGCATTGAAAACT
TTTATTCATATTCGTAAAAAGAAAATGATTCAACCATTAACAGTTAGTCAAGTAATGAGC
ATGAAAAATTCCAAAAAATTTATGACAAAATGTCAGGAATATTTCAAAAATACATCAATT
CATGGTCTTGCATATTTTGCAAATACAAAATTTATCGAAAGAAAATTGGTAAAATTATCA
GTGTGTTATTATCAAATTAATTATATGGTCGATAAAACTGATTTTAAAGTTATTAAATAT
TATGATGAGACGTTGTTTGAAACAGCTCAATATGATTGGTTTAAACAGCAATATGTGAAA
TGGAATGAAAAAAACAAAGTTAGATTTTCAAGAAATTTGATGTATGACAAAGGAATAGTT
TATACGTTTAATATGATGGACTCAAGACAACTTTTAAATCTAGAAAATGTGCATGATGAC
TTCATTTGCAAACGAAATATTTCTATGTCAAACCAGTTATCAATGACTAATTTTTTAAAT
TATCCTATAAAAACTGATTCAAAAGATCATTCAATTTTCAGATTTCGCTTTAAAGAAATA
AAAATTGATAATTCAAAAACAGAGCTTTGCCGCCGTAGATCAATTATAATTCATAAACAA
GAAACTTTTTTAAGAGTAACAATTGACTACGATGAGATAAAAATTGATCATTCAATGAAT
ATCGAAATAACACCAAAAATTATTAAAACTGATATGAGTCTAAGAAAAATTGATCCATTT
GTGAGAGATTGCTATTTTGAGAATGAGAAAAAGTTGAAATATTTTAAGATTTACACAGAA
AAGTACTGTAGATTGGAATGTATGATTCCAATCCTTGAAAGAAAACAAGAACAATTAGAA
AATAATGAAAAGTTTTCATTTAAACAAAACTGTTCATGTTTGCCGACTTGTGATTCAATT
GAATATCATGTTGATGTTTATCCAAGTGATGATGGTGCAGATGATAATGAAACTTTTGTC
ATCAATGTCAGAATGAATACAGACAACATGATTTTATTTCGACGATATCAACAATTTTCA
TTTTCTGATGCTATTTCTTATGTTGGTGGTTTGCTTGGACTTTTTGCTGGAATTTCAGTT
TTATCAATTGTTGAAATCTTTTATTTTATTACATTGCGATTGTTGAATGATATTTTGAGA
TTGTTAAAACGTCAGTTTGCATGA
>g3306.t1 Gene=g3306 Length=487
MFDNGKVLVIFYVDILDAIERNEIKIDKLDMEIDNLFTKVHQKAYSINFKYKNIQISEIK
RKRQFNEVDFLSFIGGLLGVFAGFSFLSFIEIFYWLALKTFIHIRKKKMIQPLTVSQVMS
MKNSKKFMTKCQEYFKNTSIHGLAYFANTKFIERKLVKLSVCYYQINYMVDKTDFKVIKY
YDETLFETAQYDWFKQQYVKWNEKNKVRFSRNLMYDKGIVYTFNMMDSRQLLNLENVHDD
FICKRNISMSNQLSMTNFLNYPIKTDSKDHSIFRFRFKEIKIDNSKTELCRRRSIIIHKQ
ETFLRVTIDYDEIKIDHSMNIEITPKIIKTDMSLRKIDPFVRDCYFENEKKLKYFKIYTE
KYCRLECMIPILERKQEQLENNEKFSFKQNCSCLPTCDSIEYHVDVYPSDDGADDNETFV
INVRMNTDNMILFRRYQQFSFSDAISYVGGLLGLFAGISVLSIVEIFYFITLRLLNDILR
LLKRQFA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g3306.t1 | Coils | Coil | Coil | 19 | 39 | - |
| 9 | g3306.t1 | Gene3D | G3DSA:1.10.287.770 | - | 418 | 476 | 3.3E-7 |
| 4 | g3306.t1 | PANTHER | PTHR11690:SF222 | ACID-SENSING ION CHANNEL 5 | 40 | 110 | 3.5E-26 |
| 6 | g3306.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 40 | 110 | 3.5E-26 |
| 3 | g3306.t1 | PANTHER | PTHR11690:SF222 | ACID-SENSING ION CHANNEL 5 | 124 | 473 | 3.5E-26 |
| 5 | g3306.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 124 | 473 | 3.5E-26 |
| 1 | g3306.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 39 | 94 | 6.6E-10 |
| 2 | g3306.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 200 | 469 | 7.7E-22 |
| 13 | g3306.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 69 | - |
| 14 | g3306.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 70 | 98 | - |
| 11 | g3306.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 99 | 443 | - |
| 15 | g3306.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 444 | 470 | - |
| 12 | g3306.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 471 | 487 | - |
| 8 | g3306.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 70 | 92 | - |
| 7 | g3306.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 448 | 470 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed