Gene loci information

Transcript annotation

  • This transcript has been annotated as Peptidyl-prolyl cis-trans isomerase H.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g331 g331.t1 isoform g331.t1 2780689 2781300
chr_3 g331 g331.t1 exon g331.t1.exon1 2780689 2780905
chr_3 g331 g331.t1 cds g331.t1.CDS1 2780689 2780905
chr_3 g331 g331.t1 exon g331.t1.exon2 2780966 2781155
chr_3 g331 g331.t1 cds g331.t1.CDS2 2780966 2781155
chr_3 g331 g331.t1 exon g331.t1.exon3 2781216 2781300
chr_3 g331 g331.t1 cds g331.t1.CDS3 2781216 2781300
chr_3 g331 g331.t1 TSS g331.t1 NA NA
chr_3 g331 g331.t1 TTS g331.t1 NA NA

Sequences

>g331.t1 Gene=g331 Length=492
ATGCCAACTTGGAATCAAATTCAATCACAACTTATGCATCCTGATAATCCTGTTGTTTTC
TTTGATATAAGCATTGGAAATAATGATATTGGTAGAATTATAATAGAGCTTTATTCTCAT
GAAGTACCCAAAACTGCTGAGAATTTTAGACAATTTTGTACTGGAGAGTATAAACCACAA
GGAATACCAATTGGATATAAAGGAGCATATTTTCATCGCATTATTAAAGAATTTATGATT
CAAAGTGGTGATTTTGTCAATAATAATGGAACTGGTGCTGGTTTACTTTCAATGGCTAAT
TCCGGTCCAAATACAAATGGTTGTCAATTTTTCATTACTTGTGCTAAATGTAACTTTCTT
GATGAAAAGCACGTTTGTTTTGGACGAGTTCTTGATGGTATGCTTATTGTAAGAAAAATT
GAAAATTGTCCCACTGCAACTGGAAGTAAACCTCGCATACCTATTGTAATCACTCAATGT
GGGCAATTGTAA

>g331.t1 Gene=g331 Length=163
MPTWNQIQSQLMHPDNPVVFFDISIGNNDIGRIIIELYSHEVPKTAENFRQFCTGEYKPQ
GIPIGYKGAYFHRIIKEFMIQSGDFVNNNGTGAGLLSMANSGPNTNGCQFFITCAKCNFL
DEKHVCFGRVLDGMLIVRKIENCPTATGSKPRIPIVITQCGQL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g331.t1 Gene3D G3DSA:2.40.100.10 - 8 92 0.000
11 g331.t1 Gene3D G3DSA:2.40.100.10 - 93 163 0.000
3 g331.t1 PANTHER PTHR11071:SF443 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 13 93 0.000
5 g331.t1 PANTHER PTHR11071 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 13 93 0.000
2 g331.t1 PANTHER PTHR11071:SF443 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 93 162 0.000
4 g331.t1 PANTHER PTHR11071 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 93 162 0.000
15 g331.t1 PIRSF PIRSF001467 Peptidylpro_ismrse 5 94 0.000
14 g331.t1 PIRSF PIRSF001467 Peptidylpro_ismrse 91 163 0.000
9 g331.t1 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 37 52 0.000
6 g331.t1 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 0.000
8 g331.t1 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 0.000
7 g331.t1 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 0.000
1 g331.t1 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 23 161 0.000
13 g331.t1 ProSiteProfiles PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 20 162 33.464
10 g331.t1 SUPERFAMILY SSF50891 Cyclophilin-like 10 163 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0000413 protein peptidyl-prolyl isomerization BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed