Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Peptidyl-prolyl cis-trans isomerase 11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g331 g331.t2 TTS g331.t2 2773144 2773144
chr_3 g331 g331.t2 isoform g331.t2 2773188 2781300
chr_3 g331 g331.t2 exon g331.t2.exon1 2773188 2773561
chr_3 g331 g331.t2 cds g331.t2.CDS1 2773470 2773561
chr_3 g331 g331.t2 exon g331.t2.exon2 2773617 2773682
chr_3 g331 g331.t2 cds g331.t2.CDS2 2773617 2773682
chr_3 g331 g331.t2 exon g331.t2.exon3 2780946 2781155
chr_3 g331 g331.t2 cds g331.t2.CDS3 2780946 2781155
chr_3 g331 g331.t2 exon g331.t2.exon4 2781216 2781300
chr_3 g331 g331.t2 cds g331.t2.CDS4 2781216 2781300
chr_3 g331 g331.t2 TSS g331.t2 NA NA

Sequences

>g331.t2 Gene=g331 Length=735
ATGCCAACTTGGAATCAAATTCAATCACAACTTATGCATCCTGATAATCCTGTTGTTTTC
TTTGATATAAGCATTGGAAATAATGATATTGGTAGAATTATAATAGAGCTTTATTCTCAT
GAAGTACCCAAAACTGCTGAGAATTTTAGACAATTTTGTACTGGAGAGTATAAACCACAA
GGAATACCAATTGGATATAAAGGAGCATATTTTCATCGCATTATTAAAGAATTTATGATT
CAAAGTGGTGATTTTGTCAATAATAATGGAACTGGGTCAATCAGCATTTATGGAGCTGTT
TTTGTTTTTCATGCAATTCACTTTATTACATTTTTTTATGGAGGGTTTTTCTGTTATGAA
GATCCAGAACTATCAATTGATGAAACAAACTCTTTCAAACATGTAGAACAATCATCAACA
TTACAAAGTGCCAACTGTACAACACATAAATGATAAAAAAATCTCAAATCTCGTTGATTT
CGTTACGTTCTCGCAACATCTTTTCTTCGCCTCGTTCAAATGTGAATTTATTTTGTAAAC
ACTAAAAAGCTTTTAATGTAAACTTCTCAAACTGACTGTAATAGTAGCTCTAAAAGATGG
GTGTAGTAAAAAGAAGTGAGCAGATGAAATTGAAATGTAAACGGATTTGATTTTTCTTGT
TCTAAATTTTAAGTTTTTAAGGTTTACTATCAATTCATCTTTTAAAATAAATAAACTTAG
AATTACTTAGCATCA

>g331.t2 Gene=g331 Length=150
MPTWNQIQSQLMHPDNPVVFFDISIGNNDIGRIIIELYSHEVPKTAENFRQFCTGEYKPQ
GIPIGYKGAYFHRIIKEFMIQSGDFVNNNGTGSISIYGAVFVFHAIHFITFFYGGFFCYE
DPELSIDETNSFKHVEQSSTLQSANCTTHK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g331.t2 Gene3D G3DSA:2.40.100.10 - 3 150 1.2E-38
2 g331.t2 PANTHER PTHR11071:SF443 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 13 102 1.9E-35
3 g331.t2 PANTHER PTHR11071 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 13 102 1.9E-35
5 g331.t2 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 37 52 3.7E-9
4 g331.t2 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 71 83 3.7E-9
1 g331.t2 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 23 91 1.1E-16
9 g331.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 93 -
10 g331.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 94 119 -
8 g331.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 120 150 -
12 g331.t2 ProSiteProfiles PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 20 101 19.683
6 g331.t2 SUPERFAMILY SSF50891 Cyclophilin-like 8 102 2.34E-30
11 g331.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 94 116 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0000413 protein peptidyl-prolyl isomerization BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed