General information for g331.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Peptidyl-prolyl cis-trans isomerase H.
Parent gene
- The parent gene g331 is located on chr_3: 2780689..2781300 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g331 | g331.t3 | isoform | g331.t3 | 2780689 | 2781300 |
| chr_3 | g331 | g331.t3 | exon | g331.t3.exon1 | 2780689 | 2781155 |
| chr_3 | g331 | g331.t3 | cds | g331.t3.CDS1 | 2780929 | 2781155 |
| chr_3 | g331 | g331.t3 | exon | g331.t3.exon2 | 2781216 | 2781300 |
| chr_3 | g331 | g331.t3 | cds | g331.t3.CDS2 | 2781216 | 2781300 |
| chr_3 | g331 | g331.t3 | TSS | g331.t3 | NA | NA |
| chr_3 | g331 | g331.t3 | TTS | g331.t3 | NA | NA |
Sequences
>g331.t3 Gene=g331 Length=552
ATGCCAACTTGGAATCAAATTCAATCACAACTTATGCATCCTGATAATCCTGTTGTTTTC
TTTGATATAAGCATTGGAAATAATGATATTGGTAGAATTATAATAGAGCTTTATTCTCAT
GAAGTACCCAAAACTGCTGAGAATTTTAGACAATTTTGTACTGGAGAGTATAAACCACAA
GGAATACCAATTGGATATAAAGGAGCATATTTTCATCGCATTATTAAAGAATTTATGATT
CAAAGTGGTGATTTTGTCAATAATAATGGAACTGGGTCAATCAGCATTTATGGAGGTAAT
TTTCCAGATTAAAAATTTTCTTTTAAACACGATAGTGCTGGTTTACTTTCAATGGCTAAT
TCCGGTCCAAATACAAATGGTTGTCAATTTTTCATTACTTGTGCTAAATGTAACTTTCTT
GATGAAAAGCACGTTTGTTTTGGACGAGTTCTTGATGGTATGCTTATTGTAAGAAAAATT
GAAAATTGTCCCACTGCAACTGGAAGTAAACCTCGCATACCTATTGTAATCACTCAATGT
GGGCAATTGTAA
>g331.t3 Gene=g331 Length=103
MPTWNQIQSQLMHPDNPVVFFDISIGNNDIGRIIIELYSHEVPKTAENFRQFCTGEYKPQ
GIPIGYKGAYFHRIIKEFMIQSGDFVNNNGTGSISIYGGNFPD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g331.t3 | Gene3D | G3DSA:2.40.100.10 | - | 3 | 103 | 0.000 |
| 2 | g331.t3 | PANTHER | PTHR11071 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 13 | 103 | 0.000 |
| 3 | g331.t3 | PANTHER | PTHR11071:SF447 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 | 13 | 103 | 0.000 |
| 5 | g331.t3 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 37 | 52 | 0.000 |
| 4 | g331.t3 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 71 | 83 | 0.000 |
| 1 | g331.t3 | Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 23 | 92 | 0.000 |
| 8 | g331.t3 | ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 20 | 103 | 20.925 |
| 6 | g331.t3 | SUPERFAMILY | SSF50891 | Cyclophilin-like | 10 | 103 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | MF |
| GO:0000413 | protein peptidyl-prolyl isomerization | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed