General information for g3317.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Toll-like receptor 6.
Parent gene
- The parent gene g3317 is located on chr_3: 24592325..24596218 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3317 | g3317.t1 | isoform | g3317.t1 | 24592325 | 24596218 |
| chr_3 | g3317 | g3317.t1 | exon | g3317.t1.exon1 | 24592325 | 24596218 |
| chr_3 | g3317 | g3317.t1 | cds | g3317.t1.CDS1 | 24592325 | 24596218 |
| chr_3 | g3317 | g3317.t1 | TSS | g3317.t1 | NA | NA |
| chr_3 | g3317 | g3317.t1 | TTS | g3317.t1 | NA | NA |
Sequences
>g3317.t1 Gene=g3317 Length=3894
ATGAAGCATCGAAGATATTCTTTTATGACTTCGACAGTCATTTATTGCTGTCTTATTCTT
GTACTGAATCACAAAATTTCATCAATAGCACAGTCAACATCGAATGAAGAATGCAGTTAT
GAAACAATCGATGAGTCATTACTGATGACATTATCAAATGATCAAAATATTTCTAATACT
AAGCTCCTATCATGTAGATTTAAGAAACTACCAAAAACCTTCCCCATAGCTTCCGCTAAA
AGTGTAGAAAATTTAAAAATTATTTGTGATAAACTTTTATTTGCCAATGGTGGTGATAGT
GGCAGCAAGTCTTCGAATTTTTTTGATAATTTTGAAAATTTGAAAAATTTATTTCTTGAG
AATTGTGATGGAAATTTTTTGAGAAATTTTAATTCGTTAAAGTCACTAAATGGTCTTACG
ATTCGAAATTATAAAACTTTTTGGGGTCGATATGATGAAGTGATGGATGATTTTGGAACG
TCAAATGATTATGAGCCATTTGATAATTTGCAAAATATTAAGAGTCTAGACATAAGTGAT
AACGGTATTCAAGAACTTCATCGAAATTTCTTTTGTGATTTTCATAAATTAAGTTTCCTC
AATATTTCATCAAATCAAATTTACAATTTGACAAACTTTCAATTTTCTTCGACACCAATA
AAGAATTGTGTCTTTTCTATGTCGTATCTTATATTGACGAACAATCAACTCAATTTCCTT
CCGTTCTCATTCTTCTCAAATTTTGTCAATCTAAAAGTTCTCAGACTCAATCGCAATTCT
ATATCATTCATAGAGAATTTTGTGTTTTCAAATTTAAAGCAATTGGACATGCTCGATTTA
AGTGAGAATAAAATTCAGAGCATTCAACCAGAATTATTTGACAATTTGCAAAATTTACGA
ACACTCAATCTCGAGAAAAATTCAATGAAAATACTTCCACCCGAATTACTTGCTAATTTG
AAAAAGCTCGAGCTATTAAATTTATCATCCAATTTCCTCTCATCGAATTGGATTAATTTC
ATGACCTTCAAGAATTTATTCAACTTGCGACTACTCGATTTATCCTATAATAAGCTCACT
GCGCTTGAAAATTCAGTTTTTGCTGATTTGGCAGCACTCGAAGTACTCGACTTGAAGAAC
AATCTTATTGAGAGCATTGCGATGGATACTTTTGCCAATCTGACATCACTCTCATCGCTC
GTTCTTTCACATAATTTCATCAAAAATGTCAATTTTTCTCTCAACTCGTTGACGAATCTC
AACGTACTATCGCTAGATTTTAATGAAATTTATTCTGTTGAGAAGCATTTAGTCGCGAAT
TCTATGAAACTCGTCGACCTTCATCTCAACAACAATAAATTCTTTCGTGTACCAACTTTT
GTTGAGAATTTTCAATTTCTCAAGTTTCTTGACCTCGGCGAAAATTTTATAAAAAATCTC
TCAGACTTGGAAAATCTTCCAAATCTTAAATATCTTTACGGCTTACGCTTGACCGAGAAT
CAAATTGAAACGCTCGAGAAGAATCATTTTGTTCATTTAAAGAATCTACAGATAGTTAAT
TTATCGAAAAATCGAATTCGTCACATTGATCGTGAGTCATTTGCCGCTAATGAATTCTTA
CAGGCAATTCGACTTGATGGAAATTCAATCAAAAATATTGACTATATGTTCGAGAACCTC
ACACAACTCGTCTTCCTTAATATCTCTGAAAATGCACTTGAAGTGTTTGATTACGAAAAC
TTTCCCAAAAATCTTCAGTTCCTCGATATCTCCAAAAATCAGATCAATGTGATTAAAAAT
CCAAATGAAATATCGCAGAACCTTAAGACACTCAATCTCAATTACAATCATTTAACCGAA
ATTTCTGCTTTTGTGCTACCGCGCAATCTCGAAGATCTCTATCTTCAGTCAAATCTCATT
GAAAAAATTTCTCCATACACGTTCATCAAGAAGTCATTCCTTAAGACTGTCGATTTAAAG
CACAATCGAATTGCACATCTTAACGAAAATGCATTAAGAATTTCATCGACAAAGAGTGAT
GAAAAATTGCCGGAATTTCATCTTGCAGGCAATCCGCTGGTTTGTGATTGTCACTTAAAA
TGGATGTGGCAGGACAATATAAGCGGTGGGATTAATGTAAATAATGCAATTGCATTTGGT
CACATTGAAAATCCCGAACAATTTCCGTATTTGTTAGAGGAACAAGTAAATGTAGATGAT
TCAAGAAATTATCCCTCGTATGCTGCACAGAAAATGGATGATTTCGATAACAATTATCCT
CCTATAATGGAACAACAACAGCACAATCATGTCGATAATCCGAGGCAATTCAATTTGCCA
AATGCTGTACGCACGCAACCAAAAATTGTCGATTTCGATCAAATGACGTGTCTATTCGGT
GGCAATGTACATAATAAAATTCCAATTCGTAAATTGAATCCAAATCTCTTTCTTTGCAAA
TATACAAATGTGTGCATGAAAAGCTGTCAATGTTGCGAAAATTTCTCATGTGATTGTCAA
CAAAAATGTCCAGATAGATGTAACTGTTATCACAATACAAATTGGGATGTTAATTTTGTG
AACTGTTCTTCAGCCAACTACACAAAATCATTTCCCAATCTCATTCCTATGGAGGCTACT
CATCTCCATCTAGACGGCAATCACTTTGAAATGATTAAAGATTTTTCATTCATTGGAAGA
CGTGCGTTACGTATTCTCTATCTAAATCATTCACATATTCAACAATTGACAAATCGCACG
TTTTTTGGACTCAAGCATCTAGAGCTATTGAGTTTAAAGAGCAATGAGTTGCAACAACTC
AATGGTGACGAGTTCAATGAGCTTGAAAGTGTCAAGTATCTATTTCTACAGTACAATCAT
ATAAAGTTCATTGAGCGCAAAACATTTGGACAATTACGTCAGCTGCAAGTGCTCAAGCTC
AATGGCAACATGCTTATGACACTCAATCTTCAATTTCTGCCTCAAAATGTCGCACAAATA
GACATTAGCGAAAATCTTCTTGAATGCGATTGTGAACTTATAAAAAGTCTCAAGGTGCAT
CATGCTATTGACTATCGTGACTCACTTAAGTGCCATCCAAATCAAACTTATCATGAGTAC
TTTTATGTTATGAACGAGACAAACTTTTGCAATGAGAAGCTGGCACTTGAGAATATTTTC
TTTTTTGAAAAGAATCTACCAATATTTCTCATTGTATTTCTCTGTTGTCTCTTCCTTATC
GTGCTAGTCTTTATTTTTAATCAACACATAATGTTTTGTTGCTATAAAAAGTTCAATTTG
AGATTCTTTAAGAAGCGTAATGATAAGAATAAATTCTTTGATGGATTTCTAGTTTTTAGT
AAAAAGGATGAAAATTTTTTGCTCGATGAGTTCCTTAAGCATTTTGAAACAGAAGGAAAT
TATTATAAATTCTTTCTCTTCTTCCACGATTTTTCAATTTTCAATGAACAGATATTGAAG
AATTCGGAAAATTCGCAGAAAATTATTCTCTTTTTATCAGAGAACTTTCTTAAGAACGAA
TGGAAGAAAATTGAGTTTAAGAAAATTTTCTATGAAATACTTAAGACAAAGAAGCGAAAG
AAGCTCATAATTGTGTTCCTTGATAATTTCGATAATAAAAACTTTGATCCCGAGCTCAAG
CTCATTCTCAAGACCAACTTCATTTTACGATGGAACGAAAAGTTGTTTTGGGAGAAGTTT
AAATTTTTCTTGCCAAGTCTAAATCGTAATGCTCAGTTGCAAACTCAACAACAACAAACA
ACGTCATCTCATCATGACCCCGAAAACTTTTGTCAAAATTTCCATCTAAATAATCTTCAT
AACAATCACCATCATCCAAGTCCTCAGCGCAATCTTACATCAATTCATATTTAG
>g3317.t1 Gene=g3317 Length=1297
MKHRRYSFMTSTVIYCCLILVLNHKISSIAQSTSNEECSYETIDESLLMTLSNDQNISNT
KLLSCRFKKLPKTFPIASAKSVENLKIICDKLLFANGGDSGSKSSNFFDNFENLKNLFLE
NCDGNFLRNFNSLKSLNGLTIRNYKTFWGRYDEVMDDFGTSNDYEPFDNLQNIKSLDISD
NGIQELHRNFFCDFHKLSFLNISSNQIYNLTNFQFSSTPIKNCVFSMSYLILTNNQLNFL
PFSFFSNFVNLKVLRLNRNSISFIENFVFSNLKQLDMLDLSENKIQSIQPELFDNLQNLR
TLNLEKNSMKILPPELLANLKKLELLNLSSNFLSSNWINFMTFKNLFNLRLLDLSYNKLT
ALENSVFADLAALEVLDLKNNLIESIAMDTFANLTSLSSLVLSHNFIKNVNFSLNSLTNL
NVLSLDFNEIYSVEKHLVANSMKLVDLHLNNNKFFRVPTFVENFQFLKFLDLGENFIKNL
SDLENLPNLKYLYGLRLTENQIETLEKNHFVHLKNLQIVNLSKNRIRHIDRESFAANEFL
QAIRLDGNSIKNIDYMFENLTQLVFLNISENALEVFDYENFPKNLQFLDISKNQINVIKN
PNEISQNLKTLNLNYNHLTEISAFVLPRNLEDLYLQSNLIEKISPYTFIKKSFLKTVDLK
HNRIAHLNENALRISSTKSDEKLPEFHLAGNPLVCDCHLKWMWQDNISGGINVNNAIAFG
HIENPEQFPYLLEEQVNVDDSRNYPSYAAQKMDDFDNNYPPIMEQQQHNHVDNPRQFNLP
NAVRTQPKIVDFDQMTCLFGGNVHNKIPIRKLNPNLFLCKYTNVCMKSCQCCENFSCDCQ
QKCPDRCNCYHNTNWDVNFVNCSSANYTKSFPNLIPMEATHLHLDGNHFEMIKDFSFIGR
RALRILYLNHSHIQQLTNRTFFGLKHLELLSLKSNELQQLNGDEFNELESVKYLFLQYNH
IKFIERKTFGQLRQLQVLKLNGNMLMTLNLQFLPQNVAQIDISENLLECDCELIKSLKVH
HAIDYRDSLKCHPNQTYHEYFYVMNETNFCNEKLALENIFFFEKNLPIFLIVFLCCLFLI
VLVFIFNQHIMFCCYKKFNLRFFKKRNDKNKFFDGFLVFSKKDENFLLDEFLKHFETEGN
YYKFFLFFHDFSIFNEQILKNSENSQKIILFLSENFLKNEWKKIEFKKIFYEILKTKKRK
KLIIVFLDNFDNKNFDPELKLILKTNFILRWNEKLFWEKFKFFLPSLNRNAQLQTQQQQT
TSSHHDPENFCQNFHLNNLHNNHHHPSPQRNLTSIHI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 21 | g3317.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 10 | 219 | 5.6E-12 |
| 24 | g3317.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 220 | 337 | 8.6E-24 |
| 23 | g3317.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 338 | 457 | 6.1E-23 |
| 20 | g3317.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 458 | 600 | 2.8E-24 |
| 22 | g3317.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 601 | 723 | 9.4E-23 |
| 19 | g3317.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 842 | 942 | 6.3E-18 |
| 18 | g3317.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 943 | 1053 | 5.6E-14 |
| 17 | g3317.t1 | Gene3D | G3DSA:3.40.50.10140 | - | 1102 | 1251 | 4.8E-24 |
| 8 | g3317.t1 | PANTHER | PTHR45836:SF8 | TOLL-LIKE RECEPTOR 6 | 39 | 704 | 2.5E-203 |
| 10 | g3317.t1 | PANTHER | PTHR45836 | SLIT HOMOLOG | 39 | 704 | 2.5E-203 |
| 7 | g3317.t1 | PANTHER | PTHR45836:SF8 | TOLL-LIKE RECEPTOR 6 | 782 | 1289 | 2.5E-203 |
| 9 | g3317.t1 | PANTHER | PTHR45836 | SLIT HOMOLOG | 782 | 1289 | 2.5E-203 |
| 1 | g3317.t1 | Pfam | PF13855 | Leucine rich repeat | 165 | 207 | 9.2E-7 |
| 3 | g3317.t1 | Pfam | PF13855 | Leucine rich repeat | 274 | 331 | 7.9E-13 |
| 5 | g3317.t1 | Pfam | PF13855 | Leucine rich repeat | 348 | 405 | 1.5E-14 |
| 2 | g3317.t1 | Pfam | PF13855 | Leucine rich repeat | 492 | 550 | 1.4E-10 |
| 4 | g3317.t1 | Pfam | PF13855 | Leucine rich repeat | 926 | 985 | 4.1E-11 |
| 6 | g3317.t1 | Pfam | PF01582 | TIR domain | 1116 | 1235 | 4.7E-6 |
| 27 | g3317.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 30 | - |
| 28 | g3317.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 10 | - |
| 29 | g3317.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 11 | 22 | - |
| 31 | g3317.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 23 | 30 | - |
| 26 | g3317.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 31 | 1067 | - |
| 30 | g3317.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1068 | 1095 | - |
| 25 | g3317.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1096 | 1297 | - |
| 96 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 113 | 137 | 4.901 |
| 90 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 172 | 193 | 6.326 |
| 94 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 196 | 217 | 7.466 |
| 79 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 226 | 247 | 4.87 |
| 98 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 250 | 271 | 7.335 |
| 77 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 274 | 295 | 7.496 |
| 91 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 298 | 319 | 5.979 |
| 84 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 322 | 342 | 5.525 |
| 101 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 348 | 369 | 7.727 |
| 86 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 372 | 393 | 7.08 |
| 83 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 396 | 418 | 6.688 |
| 92 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 419 | 440 | 6.002 |
| 88 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 443 | 464 | 5.394 |
| 82 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 466 | 487 | 8.598 |
| 97 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 491 | 512 | 5.109 |
| 99 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 515 | 536 | 7.158 |
| 103 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 539 | 561 | 5.263 |
| 102 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 562 | 583 | 4.909 |
| 93 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 584 | 605 | 6.957 |
| 81 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 607 | 628 | 7.781 |
| 78 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 629 | 650 | 8.112 |
| 95 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 653 | 674 | 5.756 |
| 89 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 878 | 899 | 4.978 |
| 87 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 902 | 923 | 5.325 |
| 100 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 926 | 947 | 6.141 |
| 80 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 950 | 971 | 5.463 |
| 85 | g3317.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 974 | 994 | 6.218 |
| 104 | g3317.t1 | ProSiteProfiles | PS50104 | TIR domain profile. | 1111 | 1247 | 16.79 |
| 33 | g3317.t1 | SMART | SM00364 | LRR_bac_2 | 170 | 189 | 480.0 |
| 54 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 170 | 193 | 5.4 |
| 75 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 170 | 188 | 110.0 |
| 39 | g3317.t1 | SMART | SM00364 | LRR_bac_2 | 194 | 213 | 180.0 |
| 45 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 194 | 217 | 110.0 |
| 72 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 194 | 215 | 700.0 |
| 48 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 224 | 247 | 40.0 |
| 50 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 248 | 271 | 1.3 |
| 63 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 248 | 269 | 180.0 |
| 52 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 272 | 295 | 0.0077 |
| 62 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 272 | 298 | 13.0 |
| 37 | g3317.t1 | SMART | SM00364 | LRR_bac_2 | 296 | 316 | 440.0 |
| 51 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 296 | 319 | 0.26 |
| 55 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 320 | 345 | 340.0 |
| 73 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 320 | 342 | 770.0 |
| 60 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 346 | 369 | 0.004 |
| 71 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 346 | 367 | 120.0 |
| 53 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 370 | 393 | 0.24 |
| 68 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 370 | 391 | 260.0 |
| 49 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 394 | 414 | 180.0 |
| 69 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 394 | 412 | 320.0 |
| 57 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 417 | 440 | 8.3 |
| 67 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 417 | 435 | 740.0 |
| 35 | g3317.t1 | SMART | SM00364 | LRR_bac_2 | 464 | 483 | 27.0 |
| 61 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 464 | 485 | 25.0 |
| 42 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 486 | 512 | 150.0 |
| 43 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 513 | 536 | 0.04 |
| 74 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 513 | 534 | 490.0 |
| 58 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 560 | 583 | 300.0 |
| 34 | g3317.t1 | SMART | SM00364 | LRR_bac_2 | 582 | 601 | 510.0 |
| 65 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 582 | 603 | 18.0 |
| 36 | g3317.t1 | SMART | SM00364 | LRR_bac_2 | 605 | 624 | 2.0 |
| 59 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 606 | 626 | 110.0 |
| 66 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 627 | 648 | 22.0 |
| 44 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 628 | 650 | 27.0 |
| 41 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 652 | 674 | 370.0 |
| 56 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 901 | 923 | 56.0 |
| 47 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 924 | 947 | 34.0 |
| 64 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 924 | 945 | 100.0 |
| 40 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 948 | 971 | 3.9 |
| 70 | g3317.t1 | SMART | SM00365 | LRR_sd22_2 | 948 | 969 | 280.0 |
| 46 | g3317.t1 | SMART | SM00369 | LRR_typ_2 | 972 | 994 | 59.0 |
| 38 | g3317.t1 | SMART | SM00364 | LRR_bac_2 | 994 | 1013 | 220.0 |
| 76 | g3317.t1 | SMART | SM00255 | till_3 | 1112 | 1247 | 1.8E-10 |
| 13 | g3317.t1 | SUPERFAMILY | SSF52058 | L domain-like | 103 | 492 | 2.38E-47 |
| 14 | g3317.t1 | SUPERFAMILY | SSF52058 | L domain-like | 391 | 705 | 9.86E-46 |
| 12 | g3317.t1 | SUPERFAMILY | SSF52058 | L domain-like | 844 | 1026 | 9.07E-24 |
| 11 | g3317.t1 | SUPERFAMILY | SSF52200 | Toll/Interleukin receptor TIR domain | 1106 | 1248 | 1.06E-19 |
| 16 | g3317.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 28 | - |
| 15 | g3317.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 30 | - |
| 32 | g3317.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1065 | 1087 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K01768 (adenylate cyclase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed