General information for g3321.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Inositol-trisphosphate 3-kinase B.
Parent gene
- The parent gene g3321 is located on chr_3: 24637660..24639774 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3321 | g3321.t5 | isoform | g3321.t5 | 24634804 | 24638787 |
| chr_3 | g3321 | g3321.t5 | exon | g3321.t5.exon1 | 24634804 | 24634931 |
| chr_3 | g3321 | g3321.t5 | cds | g3321.t5.CDS1 | 24634804 | 24634931 |
| chr_3 | g3321 | g3321.t5 | exon | g3321.t5.exon2 | 24635008 | 24635241 |
| chr_3 | g3321 | g3321.t5 | cds | g3321.t5.CDS2 | 24635008 | 24635241 |
| chr_3 | g3321 | g3321.t5 | exon | g3321.t5.exon3 | 24635307 | 24635340 |
| chr_3 | g3321 | g3321.t5 | cds | g3321.t5.CDS3 | 24635307 | 24635340 |
| chr_3 | g3321 | g3321.t5 | exon | g3321.t5.exon4 | 24637132 | 24637661 |
| chr_3 | g3321 | g3321.t5 | cds | g3321.t5.CDS4 | 24637132 | 24637661 |
| chr_3 | g3321 | g3321.t5 | exon | g3321.t5.exon5 | 24638649 | 24638787 |
| chr_3 | g3321 | g3321.t5 | cds | g3321.t5.CDS5 | 24638649 | 24638787 |
| chr_3 | g3321 | g3321.t5 | TSS | g3321.t5 | 24638764 | 24638764 |
| chr_3 | g3321 | g3321.t5 | TTS | g3321.t5 | NA | NA |
Sequences
>g3321.t5 Gene=g3321 Length=1065
ATGTACATGGCTTTGCCGTCTCTCAGTAATAATAATAGTACCAAACCAACCACAACAATT
AAATTCAATATACCAACTTTAACTATAATTGAAGATTTTGATAAATTGATTGCTAAAGAA
GTGATTTTTGACGAGTCAGGCGAGAAGCATATCGTCAAATTGCTTCATTTTCCAAATATC
ACACCGAGTGAACAGAAACGACTTCTCATGTCTGACAACGACGATTCAGGTTCAGGCTCA
GATAATGAAGAAGAGCAAAATGATGGAACATTTCATCAAAAAACACAAAGAAAAAAATCT
TCTACCAAAAGATCTCTCGATTTACAACGGAAAATTTCACAAAGCAAAATTAAAGAGGAG
AAAAGAGAAGCAAAACAGCACTCAAACAGCAATGGAATCCATGTGTCAGTAACAACTCAA
AACAACAGTTCAGAGCCAACCGCTCCTATTCAAATTCCCTCGATTTCATTGAAGCATGGT
CGAAGTCGAACGACACGAAATGGAAAAATATCAGGTGGCTATGAGCAGTTTAGTCAAAGT
CTTCTCACTGTGCCAATGCCCAAAGATTATTGTGATCCAAGCAGTGATGATTTGTCTAGT
GAATGGGATTCTGATTCAGTCAATGAGAGCAATAATAAAACAAATGGAACCACAAATAAG
GAACCTAAGTCAGTGGTTGGATGGAGGAAACTTAGAAATATAGTTCAATGGACACCATTT
TTTCAAACGTATTCAAAAAATAAACAAAAATATCCATGGGTTCAACTTGCTGGTCATCAG
GGAAATTTTAAAGCAGGTCTTGATGCCGGAACTGTGCTAAAAAAATTAACGCCAAAAGAA
GAGATTTGTTTTAAAGAGCTCATGAAAGACGTACTAAGACCATATGTACCAGAATTCAGA
GGCGTCTGTAATGTTGAAGGCAGTGACGATAATGAATCTCAATATTTACAGCTTCAAGAT
CTGTTGAGTGATTTCAATAAACCATTTTGTGTTATGGACATTAAAATCGGAGTGAGAACG
TATTTAGAGGAAGAGTTGTTTAAGGCAAAAGAGAAACAAAAGTTA
>g3321.t5 Gene=g3321 Length=355
MYMALPSLSNNNSTKPTTTIKFNIPTLTIIEDFDKLIAKEVIFDESGEKHIVKLLHFPNI
TPSEQKRLLMSDNDDSGSGSDNEEEQNDGTFHQKTQRKKSSTKRSLDLQRKISQSKIKEE
KREAKQHSNSNGIHVSVTTQNNSSEPTAPIQIPSISLKHGRSRTTRNGKISGGYEQFSQS
LLTVPMPKDYCDPSSDDLSSEWDSDSVNESNNKTNGTTNKEPKSVVGWRKLRNIVQWTPF
FQTYSKNKQKYPWVQLAGHQGNFKAGLDAGTVLKKLTPKEEICFKELMKDVLRPYVPEFR
GVCNVEGSDDNESQYLQLQDLLSDFNKPFCVMDIKIGVRTYLEEELFKAKEKQKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g3321.t5 | Gene3D | G3DSA:1.10.510.50 | - | 262 | 355 | 1.6E-25 |
| 9 | g3321.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 173 | - |
| 6 | g3321.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 128 | - |
| 7 | g3321.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 173 | - |
| 8 | g3321.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 223 | - |
| 5 | g3321.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 222 | - |
| 2 | g3321.t5 | PANTHER | PTHR12400:SF85 | KINASE | 161 | 347 | 1.1E-81 |
| 3 | g3321.t5 | PANTHER | PTHR12400 | INOSITOL POLYPHOSPHATE KINASE | 161 | 347 | 1.1E-81 |
| 1 | g3321.t5 | Pfam | PF03770 | Inositol polyphosphate kinase | 315 | 352 | 7.0E-8 |
| 4 | g3321.t5 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 251 | 354 | 2.71E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016301 | kinase activity | MF |
| GO:0032958 | inositol phosphate biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
